Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0829 ATGATGGAGTTGTTGTTCACTATCTCAGTGTCATATTCATCCATTACACTCTCATGCTCTCACCTCCCAATGGATCCTCCTCTCATATCTGACTCCACATTCTCCTCCGCTTACACCCTCGCCGATATTTGGCTCGGAACAACTCCCGCTTTTCCCCCTTCCGACCACCACTTCTCCAAGAATGACTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTGCAGTGTTAAAAATGATGGTTTCAAAGATGAAGCAGAAACAAGTTCTGTGAGTTGTAACAAGTCAAGTGAACAAAGCACTATGCCTTGTGAGGCACCTAAGCAAGACTACATTCACGTGAGAGCAAGAAGGGGCCAAGCTACCGATAACCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAGATCAGTGAGAGAATGAGAATTCTCCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCTTAACACAGATGGGTTTCCTTTAAAAGATGTTGGTGGTACTGGAATGGTATTTGGATCACAAGCAGCAACAGGGTATGCTCAGGGATCACATCCTGGATGCCTGCATATGCAGATAGGTGGTGGTTTGAGAGAACATGATTCAGAGGTGTCTCATGGGAATGAAACATCATTTGATAGGGCTTCTTCATCATACTCAGCCTGCTCTTCCATCATTCTCTGA 792 0.4444 MMELLFTISVSYSSITLSCSHLPMDPPLISDSTFSSAYTLADIWLGTTPAFPPSDHHFSKNDSGSNKRMKVEGCSVKNDGFKDEAETSSVSCNKSSEQSTMPCEAPKQDYIHVRARRGQATDNHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSLNTDGFPLKDVGGTGMVFGSQAATGYAQGSHPGCLHMQIGGGLREHDSEVSHGNETSFDRASSSYSACSSIIL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0829 263 PANTHER BNAC05G07950D PROTEIN 61 233 - -
Vra4g0829 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 233 IPR024097 GO:0006355
Vra4g0829 263 Pfam Helix-loop-helix DNA-binding domain 123 170 IPR011598 GO:0046983
Vra4g0829 263 Gene3D - 116 193 IPR036638 GO:0046983
Vra4g0829 263 Coils Coil 166 186 - -
Vra4g0829 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 189 IPR036638 GO:0046983
Vra4g0829 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 169 IPR011598 GO:0046983
Vra4g0829 263 CDD bHLH_AtBPE_like 109 194 - -
Vra4g0829 263 SMART finulus 125 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0829 Vra-Chr4 15248933 15258047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0829 64 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 71.942 6.31e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g0829 HLH 6.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0829 - - vra:106758689 506.523