Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0827 ATGGTGAGGTCTCCCTGTGAACAAGACACAAAGAAGCTTGCATTTGGTTCCAAGCATGGATCTGGTAACTGGACTTCTGTCCCCAGAAAAACAAGGCTAAAGAGGTGTGGGAAGAGCTGTAGTAGGCTTAGGTGGACTGATCTTAAGCACGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAGATCTACTGGAACACAAAGCTGAAAAAGAAACTCTCTCAAATGGGGATTGATCCTGTTACCCACAAGCCCTTTTCTAAACTCATTGCTGACTATGGAAACATTGGGGGTTGCCAGAAACCAAGTACCAGAATAGGGTCTATCAATAAAGACTTCAAGAGTGCAATGATGCTAAAATCAGAAGAAGGATTTACAAATGACCAATCACTAGAAACCACTAGAAACAACTTTTTATTCAACAGAGCTCATGGTGATGGTCATAATCTCTCAATGGACTTTGAGAATGAGATGATCTCAGGATGTGTGTTAGGGGAAGATCGTTTGTCAAAAACATCATCTCCTTCTACTCCTTCTTCTTGTTCCACTTCAGCTTTTAGTTGGAATGACTTCCTTCTTCTAGAAGATGCTTTTACACCACTTGACTACCAGGAAAAAGACACCCTGGTTTCAAAGGAGAATGTGGTGACCATACAGCATGCCTCAGGTAGTACTGACTTCCAATTTTCATCATCCTCTCACACTTCATTCATAGAAGCCATGCTTGATCAAGAGAATGAAATGTTTCTCAGTTTTCCTCACCTTATGGAGGAACCATCCAACTTTAGTTAA 870 0.4138 MVRSPCEQDTKKLAFGSKHGSGNWTSVPRKTRLKRCGKSCSRLRWTDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKIYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGGCQKPSTRIGSINKDFKSAMMLKSEEGFTNDQSLETTRNNFLFNRAHGDGHNLSMDFENEMISGCVLGEDRLSKTSSPSTPSSCSTSAFSWNDFLLLEDAFTPLDYQEKDTLVSKENVVTIQHASGSTDFQFSSSSHTSFIEAMLDQENEMFLSFPHLMEEPSNFS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0827 289 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
Vra4g0827 289 PANTHER F14D16.11-RELATED 7 286 - -
Vra4g0827 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 99 IPR017930 -
Vra4g0827 289 SMART sant 49 97 IPR001005 -
Vra4g0827 289 CDD SANT 52 95 IPR001005 -
Vra4g0827 289 Pfam Myb-like DNA-binding domain 52 93 IPR001005 -
Vra4g0827 289 Gene3D - 51 110 - -
Vra4g0827 289 SUPERFAMILY Homeodomain-like 16 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0827 Vra-Chr4 15235478 15236789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0827 1 284 MYB Transcription Factor Family AT3G28470 38.006 7.94e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra4g0827 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0827 K09422 - gmx:100795381 387.497