Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0815 ATGGCCGAAGATTGGGATCTACATGCGGTGGTCAGAGGTTGCTCCACCGTCACATCATCCTCCGTGTCGTCTTCTTCTTCCTCTTCCTCTGGTTTTGCCTCTTGTTACTTCCACCCTGAAGGAGTTTCCTCCTCCTCTTCTTCTTCTTCTGGCTTTTCCATCTTCAGAAGTGAACTAGGAAGCCAGGTTATGTCGCTTTCTGCGTACCCCTTTGAGGCAAGGAGCCCCATTGAGGAGCTGCATGAGCTTTGCAGGCCTTTCTTCTGCAAATCTCAGCCTCTCTCGTTGCAAGCCTCTTCCCCCTTGTCCTCACTCTCTTCCTATTCTTCTGCGCCTCCCAAAACGGTTTCATCTCAAGAGAAGCAACAACAACAGCGAAACAAGCAGCCACTCTCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCTTTTGAAAATCTCTCCTCGGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGATCTCCTTATCCAAGGGGGTACTACAGATGTAGCAGCTCAAAGGGGTGTTTGGCAAGGAAACAGGTAGAGAGGAACAGATCAGACCCAACCATGTTCATAGTGACTTACACTGCCGAGCACAACCATCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCCCCCCAAACTGCCACCGCCGAACAAGACTCTGACAAGATCAAGAGCCTCACAAAACCCTCCTCCCCTGCCACCTCAGGGGCAGAGGAAGAGGTTCCAGCACAAGTGGAAAAGTCTGAGAGCAGAGAAGAGAAAGAGGATGTGATGGATGATGAGGAAGAAGATGAATTTGTTTTGTCTGACATGGTGCTAACAGATGATTTCTTTGAGAGCTTGGATGAGCTGAGTCAACTCACTGCACCTTCTGTTGTCACAGGAGACTGTTTCAGTGACCCCTTTTCAGCTATGGCAATCCCTTCTTGGGTGGCTAGTGGTGCTGCTACTGCTGGTGGATGCATATGA 1041 0.4976 MAEDWDLHAVVRGCSTVTSSSVSSSSSSSSGFASCYFHPEGVSSSSSSSSGFSIFRSELGSQVMSLSAYPFEARSPIEELHELCRPFFCKSQPLSLQASSPLSSLSSYSSAPPKTVSSQEKQQQQRNKQPLSVTTPRSKRRKNQLKKVCQVPFENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATAEQDSDKIKSLTKPSSPATSGAEEEVPAQVEKSESREEKEDVMDDEEEDEFVLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAMAIPSWVASGAATAGGCI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0815 346 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0815 346 MobiDBLite consensus disorder prediction 105 146 - -
Vra4g0815 346 MobiDBLite consensus disorder prediction 215 258 - -
Vra4g0815 346 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0815 346 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0815 346 MobiDBLite consensus disorder prediction 105 138 - -
Vra4g0815 346 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 336 IPR044810 GO:0003700
Vra4g0815 346 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0815 346 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 336 - -
Vra4g0815 346 MobiDBLite consensus disorder prediction 212 287 - -
Vra4g0815 346 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0815 Vra-Chr4 15092313 15094302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0815 1 346 WRKY Transcription Factor Family AT4G01250 47.606 1.20e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra4g0815 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0815 K13425 - gmx:100798084 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0815 4 15092313 15094302 Vra8g2193 8 40305918 40308043 ECH
Vra4g0815 4 15092313 15094302 Vra4g0815 4 15092313 15094302 ECH
Vra9g0524 9 5658663 5660286 Vra4g0815 4 15092313 15094302 ECH
Vra4g0815 4 15092313 15094302 Vra9g0524 9 5658663 5660286 PCT