Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0811 ATGGTGTCCCTCAACTCAAACCCCCCTCAAACTTTTCCTTTCTTCGACCCCTTCAACATGGAGGATCCCAATAAGAAGGTTCGGAAACCTTACACCATTACCAAGTCCAGAGAGAACTGGACGGACCACGAGCATGACAAGTTTCTCGAAGCTCTTCACTTATTCGACCGTGACTGGAAGAAGATTGAAGCATTTGTGGGTTCAAAAACAGTCATCCAGATAAGAAGTCATGCACAGAAGTATTTCATGAAAGTCCAGAAGAATGGAACAAGTGAACATGTGCCTCCCCCTCGACCCAAAAGAAAAGCTGCTCATCCATACCCGCAAAAGGCTTCTAAAAATGCTCTCACTATATCCAAATTTACAAGGCCTTTGCAATCTTCATCTGCTTTGTCTGAATCATCATTCATTTATAGGCCAGACTCGTCTTCTGTGCTTAGAACTGCAGTTAGCAGTGTGCCATTGCCATCTTGGGGTTATAATCTTACGACACAAGTTGGTCTTCTTCCTAAAGTGACAAAAGATCATATGGTGTTGAATCAAAAAGTCAACCCTTTCAATTACTGTTACAGCAGTAGTAATGAGAGCAAACAAACAGATCAGGGTGACCAAGGCCAGCCAATTAAAGCAATGCCAGATTTTGCACAAGTATATAGCTTCATTGGATGTGTGTTCGATCCAAATGTGACTAATCATTTACAAACACTGCAACAGATGGACCCAATAAATGTGAAAACTGTATTGCTGTTGATGAGAAATCTCTCCACCAATTTAAGAAGTCCTGAGTTTGAGAATGAAAGAAGGATGCTGTCATTGTACAATGCTAACTCAGAGAGAACAAAATCATCTGGGCCATCTTTAACTGACAGATCAAAGAGTGTTATCTTATCTGCTTGA 897 0.4114 MVSLNSNPPQTFPFFDPFNMEDPNKKVRKPYTITKSRENWTDHEHDKFLEALHLFDRDWKKIEAFVGSKTVIQIRSHAQKYFMKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNALTISKFTRPLQSSSALSESSFIYRPDSSSVLRTAVSSVPLPSWGYNLTTQVGLLPKVTKDHMVLNQKVNPFNYCYSSSNESKQTDQGDQGQPIKAMPDFAQVYSFIGCVFDPNVTNHLQTLQQMDPINVKTVLLLMRNLSTNLRSPEFENERRMLSLYNANSERTKSSGPSLTDRSKSVILSA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0811 298 PANTHER MYB TRANSCRIPTION FACTOR 15 286 - -
Vra4g0811 298 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Vra4g0811 298 MobiDBLite consensus disorder prediction 88 109 - -
Vra4g0811 298 PANTHER SWI/SNF COMPLEX-RELATED 15 286 - -
Vra4g0811 298 CDD SANT 39 82 IPR001005 -
Vra4g0811 298 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Vra4g0811 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Vra4g0811 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Vra4g0811 298 Gene3D - 39 87 - -
Vra4g0811 298 SMART sant 36 84 IPR001005 -
Vra4g0811 298 MobiDBLite consensus disorder prediction 275 298 - -
Vra4g0811 298 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0811 Vra-Chr4 14984749 14991132 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra4g0811 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0811 - - gmx:100791774 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0811 4 14984749 14991132 Vra4g0811 4 14984749 14991132 ECH
Vra9g0530 9 5794186 5800321 Vra4g0811 4 14984749 14991132 ECH
Vra4g0811 4 14984749 14991132 Vra9g0530 9 5794186 5800321 PCT