Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0804 ATGTCAATCTTCGACGGAGCTTTCATGAACACGCAGCTTTCCAAGCACACTTCTATCTTCGGGCTCCGTCTCTGGGTCGTGATCGGAATCCTCATCGGCGTCTTCATCGTCTTCACGCTCTTCCTCCTCTCCCTCTGTCTAGTATCTCGTCGGAACCGCCGCCGTTCTGTCGCCGGCTATAAGGTCGCCGGATCCGCCCAAGCGGCGAAGGAAATTCATACTATAGTGCACCTTCCTGGATCCCACATGCCCCGGCCTCCGGCGAAGGCGCCGGAGATCCAGGTGGAGATGGGGAAGGCGGAACACCGGGTGGTTGTCCACTGCGATAGGGTTTCGAGTGAGGAGAGTAAGGGAACGATGGGGAGTGGTTGCGAAACGACGTCGTCTTTTGGAAGTGGGAGTGTTGGTGGGCTTGGGCTTGGGCCTGAGGTTTCTCATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGAGGGTTGTGTCCGGAAAACGTGGTTGGTGAAGGTGGTTATGGCATTGTCTATCATGGGGTGCTTAATGATGGTACCAAAATTGCCGTGAAGAACCTCTTGAATAACAAGGGCCAAGCTGAGAAAGAATTTAAAGTAGAAGTAGAAGCTATTGGTCGAGTGCGACACAAAAATCTTGTTCGGTTGCTTGGCTACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGTAATCTAGAACAATGGTTGCATGGGGATGTCGGACCTGTAAGCCCTTTGACATGGAACATACGCATGAACATTATTTTGGGAACTGCAAGAGGATTGGCTTATCTTCATGAGGGTCTTGAGCCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGACAATGGAACTCCAAGGTTTCTGATTTTGGACTTGCCAAGCTTTTGTGTTCTGAGAATAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACCGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGAATCCTTATCATGGAGATAATAACTGGAAGAAGCCCTGTTGATTATGCTAGACCACAAGGAGAGGTTAATTTAATAGAATGGTTGAAGACTATGGTCGGGAATAGAAAATCTGAGGAAGTAGTTGATCCTAAGCTTCCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCTTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGACCAAAGATGGGACATGTGATCCACATGCTTGAGGCAGACGACATGTTATTCCACAATAAAACTGATGGAGATTCTTCTCGTTCCTATCAAAATGAACATAAGGACTCAAATTTAGACAAGAGAACAGATGGTGTCACTGATCAAAGTGAAGATGCTAGTAGTAGTAGAAATAATCATCAGGCCACTACATGGAGATGA 1476 0.4709 MSIFDGAFMNTQLSKHTSIFGLRLWVVIGILIGVFIVFTLFLLSLCLVSRRNRRRSVAGYKVAGSAQAAKEIHTIVHLPGSHMPRPPAKAPEIQVEMGKAEHRVVVHCDRVSSEESKGTMGSGCETTSSFGSGSVGGLGLGPEVSHLGWGRWYTLRELEDATGGLCPENVVGEGGYGIVYHGVLNDGTKIAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWNIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYARPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDMLFHNKTDGDSSRSYQNEHKDSNLDKRTDGVTDQSEDASSSRNNHQATTWR* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0804 491 SUPERFAMILY Protein kinase-like (PK-like) 144 437 IPR011009 -
Vra4g0804 491 Gene3D Transferase(Phosphotransferase) domain 1 241 450 - -
Vra4g0804 491 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 482 - -
Vra4g0804 491 Gene3D Phosphorylase Kinase; domain 1 149 240 - -
Vra4g0804 491 MobiDBLite consensus disorder prediction 474 491 - -
Vra4g0804 491 ProSiteProfiles Protein kinase domain profile. 165 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0804 491 SMART serkin_6 165 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0804 491 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Vra4g0804 491 PANTHER OS01G0323000 PROTEIN 1 482 - -
Vra4g0804 491 MobiDBLite consensus disorder prediction 447 491 - -
Vra4g0804 491 Pfam Protein kinase domain 169 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0804 491 MobiDBLite consensus disorder prediction 447 473 - -
Vra4g0804 491 CDD STKc_IRAK 171 437 - -
Vra4g0804 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0804 Vra-Chr4 14891956 14895791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0804 104 437 Receptor kinase-like Gene Family AT4G02010 43.491 1.44e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vra4g0804 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0804 - - gmx:100800724 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0804 4 14891956 14895791 Vra9g0531 9 5802503 5806134 PCT