Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0800 ATGGCGGAGGGGAACGACTCGGACGAGTCGACTTGGGAGTATGACCCGGTGGAGGAGGTGCAGCGAGTCATCGAATCGGTCGTTCAGTTCGGGGACTACCGGAGGACGCAGCGGAGGGAGTGCCACAACCTCGTGCGCCGTTTCAAGCTCATGTTACCGATCTTGGAAGAGCTTCGCGACATCTCACAACCCTTTACGAAAAACGGCGTCGCTTGGTTAGTCCAATTCAAGGAGGCGCTATTGTTCGCCAAGGATTTGTTGAAACTGTGCAACCAAGGAAGCAAGATTTACCTCTCTTTGGAGACAGAGACGATAATGGCCACGTTTCAGAAAGCTTATGAAAAATTAAGCCAAGCGTTTGGTGGCGTGCCTTGTGAGGAATTGGGCATCTCGGATGAAGTCAAAGAGCAGCTTGAGCTAATGCACGTGCAACTGAAGCGAGCCAGGAGAAGAACTGATACACAGGACATAGAACTTGCGATGGATATGATGGTAGTGTTCTCTGATGAGGATGATAGAAATTCTGACAGTGCTATAATCGAGAGGCTGGCAAAAAAGTTGGAGCTTCATAGCGTTGAGGAACTTAACATAGAAACAATGGCCATCAGGCAACTTGCAGAAGAAAGAAAAGGGCAACAGATTGAAAGTACTATGCGAATAATCAAACTTCTCAACAAATTCAAACGCGTTGCAGGCATGCCAGAAACCAGTGTACTTGATGATCCTGTCGCACCCAAGATGCTAGAGAGGTGCCCCTCTTTGGTCATCCCACACGAGTTTCTCTGCCCAATAACACTAGAAATCATGACGGATCCTGTTATCATAGCAAGTGGACAGACATTTGAAAGGGAAAGCATAGAGAAGTGGTTCGAAGCCAACCACAAGACATGCCCAAAGACAAGGCAACCTTTGCAGCACATGTCATTGGCACCAAACTGCGCATTGAGAAGTTTGATTGAAGAATGGTGTGTGAACAACAACTTCAAGCTTCCCAAAAAGTACGATTCAGCTAAAGAAAGTTGTCCAGGAAAAGAGGAAATTCCTAGTTTGGTTGAGAGCTTAGGGTCCATCCATTTAGAAGAGCAAAGAAAAGCAGTGGAGAAGATACGTATGGTGTCAAAGGAGAATGCTGAGAACAGGGTGTTGGTAGCTGAATGTGGAGGAATACCACCACTAGTGCAACTACTGTCGTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTAAACCTATCAATTGATGAGGGTAACAAGAGACTTATATCATCAGAAGGTGCGATTCCAGCTATCATAGAAGTTTTGGAGAATGGAAGTTGTGTGGCTAAGGAAAACTCGGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTTGGTCAATCAAATGGGTTGCCAGCTTTGGTGAATTTGTTGAAGAATGGAACAGTTAGAGGGAAGAAAGATGCTATCACAGCTCTTTTCAACTTATCTTTGAACCAAGCAAACAAAGGTAGGGCCATTAGGGCTGGCATTGTAGCACCCTTGGTTCAGTTGCTGAAGGACGTAAACTTAGGGTTGATTGATGAAGCTCTCTCCATTCTGTTACTCCTTGTTTCAAATTCAGAAGGAAGACAAGAGATTGGACAACTTAGTTTCATTGAAACTCTTGTTGAGTTCATGCGAGAAGGGAGTCCCAAGAACAAGGAATGTGCAGCCTCAGTTCTTCTTGAGTTGTGCTTGAATAACTCATCCTTCATATTGGCAGCACTTCAGTTTGGAGTGTATGAACATTTGATACAGATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATGGCAATCTTAGAGCTCATAACCAAAAGCGAGCAGATTTAA 1881 0.4434 MAEGNDSDESTWEYDPVEEVQRVIESVVQFGDYRRTQRRECHNLVRRFKLMLPILEELRDISQPFTKNGVAWLVQFKEALLFAKDLLKLCNQGSKIYLSLETETIMATFQKAYEKLSQAFGGVPCEELGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDEDDRNSDSAIIERLAKKLELHSVEELNIETMAIRQLAEERKGQQIESTMRIIKLLNKFKRVAGMPETSVLDDPVAPKMLERCPSLVIPHEFLCPITLEIMTDPVIIASGQTFERESIEKWFEANHKTCPKTRQPLQHMSLAPNCALRSLIEEWCVNNNFKLPKKYDSAKESCPGKEEIPSLVESLGSIHLEEQRKAVEKIRMVSKENAENRVLVAECGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISSEGAIPAIIEVLENGSCVAKENSAATLFSLSMLDEIKEIVGQSNGLPALVNLLKNGTVRGKKDAITALFNLSLNQANKGRAIRAGIVAPLVQLLKDVNLGLIDEALSILLLLVSNSEGRQEIGQLSFIETLVEFMREGSPKNKECAASVLLELCLNNSSFILAALQFGVYEHLIQIKQNGTNRAQRKAMAILELITKSEQI* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0800 626 SMART arm_5 499 539 IPR000225 GO:0005515
Vra4g0800 626 SMART arm_5 417 457 IPR000225 GO:0005515
Vra4g0800 626 SMART arm_5 376 416 IPR000225 GO:0005515
Vra4g0800 626 SMART arm_5 540 580 IPR000225 GO:0005515
Vra4g0800 626 SMART arm_5 458 498 IPR000225 GO:0005515
Vra4g0800 626 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Vra4g0800 626 Pfam Armadillo/beta-catenin-like repeat 460 497 IPR000225 GO:0005515
Vra4g0800 626 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Vra4g0800 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Vra4g0800 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 330 IPR013083 -
Vra4g0800 626 SUPERFAMILY RING/U-box 256 331 - -
Vra4g0800 626 Coils Coil 131 151 - -
Vra4g0800 626 Gene3D - 13 124 IPR036537 GO:0007166
Vra4g0800 626 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 12 624 - -
Vra4g0800 626 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Vra4g0800 626 PANTHER U BOX DOMAIN-CONTAINING 12 624 - -
Vra4g0800 626 CDD RING-Ubox_PUB 260 302 IPR045210 -
Vra4g0800 626 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Vra4g0800 626 SUPERFAMILY ARM repeat 336 621 IPR016024 -
Vra4g0800 626 Gene3D - 332 626 IPR011989 -
Vra4g0800 626 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0800 Vra-Chr4 14867726 14870406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0800 17 626 U-box Gene Family AT5G42340 62.131 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0800 - - gmx:100777362 1009.21