Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0795 ATGGGATTTCCGGTAGGGTATCCGGAAGTGCTGGTCCCCAAGCTCTTCCTCCACGCGCTCTCGCTCCTTGCGTGGCTCCGCTCGCTCGTCGCCGCGCTCTTCCACCTCCTCCGCCTCTCCGACCTCCTCGACACCGACGCTACCGCGATCGCTTGGCCGCCGGAGTCCCCGCCGCCGCGCGCTCCGACTCTCTCCGCGCTCCTCATCCGCGAGTTTCTCCCCGTGGCGGCGTTCCGTGACCTGGACGGCACCGGCGAGTCCCCTCCGTCCCCGACGGGGTGCGCGGTGTGCCTGAGCGAGTTCTGCGCGGAGGAGGAGATCAGATGCATGGCGAACTGCAAACACATGTTCCACCGCGCGTGCGTGGACCGTTGGATCGATCACGACCAGAAGACGTGTCCTCTCTGTAGGACACCATTCGTGCCGGAGCACAAGGTGGAGGAGTATAACCAGCGGCTATGGGCCGCTTCTGGTGTTTCCCAGTTTTATCAAGATGATTACACTCCTTCTCTCTGA 516 0.6376 MGFPVGYPEVLVPKLFLHALSLLAWLRSLVAALFHLLRLSDLLDTDATAIAWPPESPPPRAPTLSALLIREFLPVAAFRDLDGTGESPPSPTGCAVCLSEFCAEEEIRCMANCKHMFHRACVDRWIDHDQKTCPLCRTPFVPEHKVEEYNQRLWAASGVSQFYQDDYTPSL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0795 171 SMART ring_2 94 136 IPR001841 -
Vra4g0795 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 146 IPR013083 -
Vra4g0795 171 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 168 - -
Vra4g0795 171 Pfam Ring finger domain 94 137 IPR001841 -
Vra4g0795 171 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 168 - -
Vra4g0795 171 SUPERFAMILY RING/U-box 93 146 - -
Vra4g0795 171 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0795 Vra-Chr4 14796747 14797404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0795 1 158 C3H Transcription Factor Family AT1G63840 44.654 2.85e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0795 K16281 - gmx:100813224 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0795 4 14796747 14797404 Vra9g0551 9 6019238 6019949 PCT