Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0791 ATGATGGGTAACGGAGACCCTTTGGATTTGTATAAACTTTTCATGGTGGTGAAGAAGAAAGGTGGTTATGATGCTGTTTGTAAGAATAGGCTGTGGGATTTGGTGGGGGAAGAGTATGGATTGGGTGTGAAGGTTGGTTCCGATGTGGAACATGTTTACAGCAAACACTTAAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGGTGGCAAGTTTGCTGAATATGGTTTAGAGGGTGATAGAGTTAAGTTTCAGAAGCATTTGATGGAGGCACACACTGAATCCATGTTGGACGATTCTGGTGAGGAGGAGGTAGGAGATGAACATGAGAGGAGGGAGTGTGGCTGTCCGGATGGTAGGAAGCTCAGTGGTAGTAATAGAGTCAAGTGTGTGAAACCAGAGTCCAATGGGGCTGAACAGGAGAGTGCTTATAAGTATATAGATAGGAGTAAGTCATGTGGTAGTAATAGTGTGAAAGACAAGAATACAAATTCTAATGGGAATGAATATGATAATGTATGTGACTATCTAGAGGGGAGGAAGTTTGGTGGTACTAATAGGGTGAACGGGGTGAATCCAGATTTCAATGAGGCCAAGAAAGTTAGAAGGCCGGAACTTGTTGATTTGGACATGCTGGAGGACCACGACAAGGAAAGTGACATGCTTAGATTGTCAGATGGAAGCAAGAGCAACAATAAAGATGATGATGACGATAGTGAAGTCTTGATATTGGATCCATCTAGTGTTGATAAAAAGAAATTTGGTCACAAGAGGAAGAGAGAGTCTGTGTCAGAAATGCTAATTTGGATTAACAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCGATTCCTGAGAAGTCTAAGTGGAAGTCTTGCAGTAGTCAAGAGATCTGGAAGCAGGCTTTGTTGTTTCGAGAAGCAGTCTTTCTAAAGAAAGATTTTGAGACAGCCAATGAACAACTTAGTTGGCAGAGTCAGAAAATGCATCCTTCCATGTACGATGATCGCGTTGAGGCATTGTACAATTTTAGAAAGAGGTTGAAGTGTGAAGAGAAGTCTTTATTGGGAACATCTACATCTGATGGAGTCTCCTCGACTTCGTCGAAAACAAAAGCTCGTGGAAATTTGGAGAGAACCTCAAGTTCTCGATCTGAAAATGTTGTTGATAAGAAGTTACATGACTCCTGTAGTCTTGATAAATATGCCCGGGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATAACTTGTGAGAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCTCCAAAATTTGTAAATTCAAAATCGTGTCTTATTGAAAGGGACCCGATTGGAAAAGGAAGACAAGATTCATGTGGCTGCCCAGTACAAGGTTCTGTTGAGTGTGTCCGGTTTCATGTTGGTGAGAAAAGGTCTAAAGTTAAGATGGAGCTGGGGGAGGCTTTTTTCCAATGGAGATTAGACATGGTAGGTGAAGAAGTTAGTAGTTCTTGGACAGATGAGGATGAGAAGAAGTTCAGAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTTTTGGGATCATCTCTTTAAAACATTTCCTAAGAAGAGCAGAGAAGATTTGGTCTGCTACTATTTCAATGTCTTTCTTCTGCAGCAGAGAGCATATCAGAACAGGCATACTCCAGATAACATTGATAGTGATGATGATGAATCAGAGTTCACACCATTGAGGAAAGTGTTTGGACATCAAACACCAAAATCACGCAACCTCACCTTGTTATCACCCAAAAAATCCACTGGCAAAAGGTCAAATAGCAAGTGA 1845 0.4173 MMGNGDPLDLYKLFMVVKKKGGYDAVCKNRLWDLVGEEYGLGVKVGSDVEHVYSKHLSALETCLKNVAGGKFAEYGLEGDRVKFQKHLMEAHTESMLDDSGEEEVGDEHERRECGCPDGRKLSGSNRVKCVKPESNGAEQESAYKYIDRSKSCGSNSVKDKNTNSNGNEYDNVCDYLEGRKFGGTNRVNGVNPDFNEAKKVRRPELVDLDMLEDHDKESDMLRLSDGSKSNNKDDDDDSEVLILDPSSVDKKKFGHKRKRESVSEMLIWINSIAKNPCDPAVGSIPEKSKWKSCSSQEIWKQALLFREAVFLKKDFETANEQLSWQSQKMHPSMYDDRVEALYNFRKRLKCEEKSLLGTSTSDGVSSTSSKTKARGNLERTSSSRSENVVDKKLHDSCSLDKYARVHIPVGPNHQAEVPEWTGITCESDSKWLGTQIWPPKFVNSKSCLIERDPIGKGRQDSCGCPVQGSVECVRFHVGEKRSKVKMELGEAFFQWRLDMVGEEVSSSWTDEDEKKFRDVVKSNPASLDKCFWDHLFKTFPKKSREDLVCYYFNVFLLQQRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTPKSRNLTLLSPKKSTGKRSNSK* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0791 614 MobiDBLite consensus disorder prediction 209 237 - -
Vra4g0791 614 MobiDBLite consensus disorder prediction 209 242 - -
Vra4g0791 614 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 609 - -
Vra4g0791 614 SUPERFAMILY ARID-like 4 72 IPR036431 GO:0003677
Vra4g0791 614 MobiDBLite consensus disorder prediction 568 584 - -
Vra4g0791 614 MobiDBLite consensus disorder prediction 94 114 - -
Vra4g0791 614 MobiDBLite consensus disorder prediction 358 384 - -
Vra4g0791 614 SMART ELM2_2 408 460 IPR000949 -
Vra4g0791 614 SMART bright_3 2 66 IPR001606 GO:0003677
Vra4g0791 614 MobiDBLite consensus disorder prediction 567 614 - -
Vra4g0791 614 Gene3D - 1 70 IPR036431 GO:0003677
Vra4g0791 614 MobiDBLite consensus disorder prediction 358 388 - -
Vra4g0791 614 MobiDBLite consensus disorder prediction 151 170 - -
Vra4g0791 614 ProSiteProfiles ELM2 domain profile. 406 530 IPR000949 -
Vra4g0791 614 CDD ARID 4 61 - -
Vra4g0791 614 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vra4g0791 614 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 609 - -
Vra4g0791 614 MobiDBLite consensus disorder prediction 592 614 - -
Vra4g0791 614 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0791 Vra-Chr4 14718017 14722793 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vra4g0791 ARID 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0791 - - vun:114182925 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0791 4 14718017 14722793 Vra9g0559 9 6185695 6190250 PCT