Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0789 ATGCAATCTGGCGGCGGCCCCGGTGGTGGGCCGGGCCGGAATCCGGCGGGACGGGCGGCATCGACGTCGTCAGCGGCTGCCTCGCCGTCTTCTTCGTCATCGGCGGCGTCACACTTGGAGTCATTGCAGCAGCAGCAACAACAACAGCAGATAGGTTCTAGGCAGTCATTTCAACAGCAGCTGCTTAGAAAACCTGAAGGGAGTGAAGCGTTTTTGGCATATCAAGCAGGTCTTCAAGGAATATTTGGGAGTAACAATTTCCCACCTAGTTCCATGCAACTGCCTCAACAGTCTCGAAAATTTGTTGATCTAGCTCAGCATGGATCCAACCAGGGTCAAGGTGTTGAGCAACAAATGCTAAATCCTGCACAAGCAGCATACTTTCAATATGCCCTGCAGGCTTCACAACAAAAGTCTGCTTTGGCAATGCAGCAACCTAAAATGGGAATGATGGGCTCTTCATCTGTAAAGGATCAGGACATGCGAATGGGAAATCTGAAAATGCAGGATCTTATGTCCATGCAGGCAGTAAATCAAGCCCAAGCATCATCGTCTAGAAATTCATCTGACCATTTTAATCATGGGGAAAAACGGGTAGAGCAAGGGCAGCAGCTAGCACCTGCTAGAAAGAGTGAAGGAAATCCTTCAAGTCAGGGACCAGCTGTTGGAAATATAGTACCTGGAAACATTATAAGACCTGTGCAAGCTCTGGCAAATCAACAGAACACCTCAAACACCATGAACAACCAGATTGCAATGTCTGCTCAATTGCGGGCTATGCAGGCATGGGCACATGAACAAAATATTGATATGTCACATCCTGCAAATGCTCAGTTAATGGCTCAGCTTATTCCATTGATGCAATCAAGGATGGTTCAACAACCGAAGGTAAATGATACTAACTCAGGTGCACAGTCATCACCTGTCCCCGTTTCAAACCAGCAGGTTACTTCTCCAGCAGTGGCAAGTGAAAGTTCAGCACGTGCTAATTCATCTGGCGATGTGTCTGCACAGTCAGGTTCTGTGAAAGGCAGGCAGATGGCTCCACCCAACCATTTGAGCCCACCAATTAGTGCTGGTATAGCCAGTACCTCTAGTGACATGACTGTGCAGCAATTCAGTCTTCATAGCAGAGACACTCAAGGATCTTTGAAGCAATCAGTTCTAACTGGAAATGGAATGCATTCACAGCAAACCTCGGCAAACATGAACATTGGTGCAGATCATCCTCTGAATGCGAAAGCATCATCATCTTGTCCAGAACCTGCAAAAATGCAGTACATCAGGCAATTAAACCAATCTGCTTCTCAGGGTGGAGGTCTGACAAATGAAGGTGGATCAGGAAATTACACCAAAACTCAAGCGGGGCCATCTCAGACACCTCAACAAAGAAATGGTTTCACCAAACAACAGCTTCATGTTCTTAAGGCACAAATACTAGCATTTCGGCGTCTGAAGAAAGGAGAAGGTGCACTTCCCCAAGAACTTCTACGGTCCATCAATCCACCACCTCTTGATTTGCAAGTGCAGCAGCCAATTCATTCTGGAGGAGCACAAAATCAAGAGAGATCGGCTGGAAATATTGTGGCTGAACAGCAAAGGCAGAATGAGGCCAATGCCAAAGATTCACAGCATATCCCATCCATTAGTGGAAATATCTCTTCAAAGAAGGAAGCCTTTATGAGAGATGAGAGCAATCCTGTAACAGCTGTTTATATGCAGGCCACGTCTCCTGTGATAAAGGAATCTGCTGGAAGGGAAGAGCAGCAGTCTGTTGTATGCTCTGCTAAGTCTGATCAGGAAAATGAACATGGAATTAACAGAACATCTGTTAGAAACGAGTTAGTATTAGACAAGGGAAAAGCTGTTGCTGCTCCCCAGTCTTCCGTAGCTGATACAGTGCAACCTAATAAACCTTCTCAGGCGAGCACTGTTGCCCAGTCAAAGGATATGGCTTCCACCGGAAAATACCATGGACCCCTATTTGATTTTCCTTTCTTCACCAGGAAACATGATTCCTTTGGGTCATCAATGATGCTCAACAACAACAACAATTTGTCTCTGGCATATGATGTGAAAGAACTTCTGTTTGAGGAAGGCATGGAGGTCATTACCAAGAGAAAGACAGAGAATTTAAGGAAGATTGAAGGTTTGCTTGCAGTAAACTTAGAGAGGAAAAGAATTAGGCCAGATCTTGTGTTAAAGTTGCAAATTGAAGGAAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGTTTAAGGGACGAGATTGATCAACAACAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGGAAGTTTGTTAGACTGTGTGAACGTCAGCGTATGGAACTTGCTAGACAAGTTCACGCATCTCAGAGAGCTTTAAGGGAGAAGCAACTGAAATCTATATTTCAGTGGCGCAAGAAGCTCCTTGAAACCCATTGGGCCATTCGTGATGCCCGTACTGCTCGCAACAGGGGAGTGGCTAAATATCATGAAAGGATGTTGAAAGAGTTCTCAAAACGTAAGGATGATGACAGAAATAAAAGGATGGAAGCCTTGAAAAACAATGATGTTGACAGATATAGGGAGATGTTGTTGGAGCAGCAGACTAGCATCCAAGGGGATGCTGCGGAGAGATATGCTGTCCTCTCAACTTTCTTAACCCAGACTGAAGAGTATCTCCATAAATTAGGAAGTAAGATAACAACTGCTAAGAATCAACAGGAAGTGGAGGAGGCTGCGAAAGCTGCTGCAGCTGCTGCGCGATTGCAGGGTCTTTCCGAAGAAGAAGTCAGAGCCGCAGCAGCTTGTGCTGGAGAAGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCCCCTAAGGACAGTTCCTCTGTCAGCAAGTATTACAGCCTTGCTCATGCAGTGAGTGAGAAGGTTGTACGTCAACCATCAATGTTGCGGGCTGGCACACTTAGAGACTATCAGCTGGTTGGTTTGCAATGGATGCTTTCCCTGTATAACAACAAATTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTAATTGCCTATTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTGTATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGTCAAAGTTATATTCACAGGAGATTATGGCTATGAAATTTAATGTCCTGGTGACTACTTATGAGTTCATCATGTATGATCGGTCGAGGCTTTCGAAAATTGACTGGAAGTATATAATAATAGATGAAGCACAGAGAATGAAGGATAGGGAATCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAAAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAAGAACTGTGGTCGCTCTTAAATTTACTTCTTCCAGAGGTTTTTGACAACAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAAAGGAAGGTTCCAGTCAAAATACAGAAGATGATTGGCTTGAGACTGAAAAAAAAGTTATCATTATCCATCGACTTCACCAAATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAAGTTGAGGGTTCACTACCACCAAAGGTCTCTATAGTTTTACGATGTAAGATGTCAGCTTTGCAGAGTGCCATTTATGACTGGGTCAAATCAACGGGTACCCTTCGACTTGATCCCGAGGGTGAGGAATCTAAGATTCAAAAGAATCCACTCTACCAGGCAAAAGAGTACAAGACTTTAAACAACAGATGCATGGAGTTGCGGAAAACTTGTAATCATCCATGTCTTAATTACCCATTATTTAATGAATTATCTACAAATTTAATTGTAAAATCTTGTGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTCAGTACCATGACAAAACTTCTAGACATATTGGAAGATTACTTGAATCTGCGAAGGTTTGTGTACAGAAGAATTGATGGGACTACTAATTTGGATGACCGTGAATCAGCTATAATGGACTTTAATAGCCCTGATTCAGACTGTTTTATCTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCTAACCCGAAAAACGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGACAGAAAAGAGAAGTCAGAGTTATCTACATGGAGGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAGTGGAGGCACGGTCGATATGGAGGATGAATTTGTGGGTAAGGACCGCTATATAGGATCAGTTGAGAGCCTCATAAGGAACAATATTCAACAATACAAGATAGATATGGCTGATGAGGTTATCAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAGACATTGTTACATGATGAAGAAAGGTATCAAGAAAATGTCCACAATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCCAGGAGTGATGAGGAAGTGGAGTTGTTTGATCAAATGGATGAAGAACTGGATTGGCCTGAGGAGATGATGCAACATGATGAGGTGCCACAGTGGCTTCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTTCTTTGTCTAAAAGACCATCAAAGAACATTTTATTGGGTGGTAGTGTTGGCATGGACAGTGAGGTGGGTTCTGAAAGGAGAAGGGGACGGCCCAAGGGGAAAAAACATCCTAATTATAAAGAGTTGGAAGATGAAAACGGAGAATATTCTGAAGCAAGTTCTGAAGACAGAAATGAGTATTCTGCACAAGAAGAAGGGGAAATTGGAGAGTTTGAAGATGATGTTTATAGTGGGGCTGATGGACATCAATTGGAAGAGGATGGTTTAACTTCTGATGCTGGATATGAAATTGCTCGTTCTTCAGAAAATGCTAGACATAATCATGTGGCTGAAGAGGCTGGTTCCTCAGGATCATCCTCTGACAATCAAAGATTGGTGCAAACAGTTTCACCTTCAGTTTCTGCTCAGAAATTTGGTTCTCTCTCCGCATTGGATGCCAGGCCAAGCTCCATTTCAAAAATTATGGGAGACGACTTGGAAGAAGGGGAAATTGCAGTATCGGGTGATTCTCACATGGATCATCAACAATCAGGAAGTTGGATTCATGATCGAGACGAGGGGGAAGATGAACAAGTTTTACAGAAACCCAAGATTAAGCGCAAGCGTAGTCTTCGTGTTCGTCCCCGCCAAGCTGTGGAAAGGCTTGAGGACAAGTCTGGCAGTGAGATGAAATCTCTTCAACGGGGAGAATCATCTCTTTTGGTAGACTATAAATATAAAATGCAAACAAGGATTGATACGGAATCAAAATCATTTATAGACAACAATGCCGGCAAGCATGATAAGAATGCAACAACATTAAAAAACAAGCAAAAGTTACCTTCAAGGAAAGTAGCTAATACGTCCAAATTACATGGGTCACCTCAGTCTAATCGTTTGAATTGCTCATCTGGTCCTTCTGATGATGGTGGTGAACACCCTAGAGAAAGTTGGGAGGGGAAGCCTCTAAATTCAAATGGATCTTCAGTTCATGGCACTAAGACGACTGAGATAATCCAAAGAGGATGCAAGAATGTAATTAGCAAGCTCCAAAGGAAAATAGACAAGGAAGGCCATCAGATTGTACCTTTGCTAACAGATTTATGGAAGAGGATTGAGAATTCAGGGTATGCGGGTGGATCTGGGAGTAGTCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTATACCGGAGTAATGGAGCTCGTGTTTGATGTACAGTTCATGTTGAGGGGTTCAATGCATTTCTACGGATATTCATATGAGGTGAGATCTGAAGCAAGGAAGGTTCATGATCTATTCTTTGATATCCTGAAAATTGCGTTCCCGGATACAGATTTTGGAGAAGCAAGATGTGCAATTTCTTTCTCCAGCCAAATTCCTGCGGGTACCACCACATCTCCAAGGCAAGTGACAGTTGGCCCCAGCAAAAGGCACAGAGCGACCAATGATGTGGAAACCAATCCAATCCCTTCACAGAAGCTGCCACAAAGCGGAGCTGCTTCTAATGGCGAAAGCAGCAGGTTCAAAGGTTCAAAAACTGGTAGTGGCAGCAGCAGTGCACGTGAGCAACCTCAGCAGGATAATCATCCAATGCTCACCCATCCAGGTCAGTTGGTTGTGTGCAAGAAGAAAAGAAATGACAGAGAAAAGACATTGGGGAAGGGAAGGAGTGGATCAGCATGTCCTGTTTCTCCACCTTGTGCTATAAGAAGTCCAGGGTCAGGTTCAAACCCAAAGGATGGTAGATGGGGTAGTCAACCATCTCAACACTCAAATGGGTCTGCTGGGTCAGTTGGTTGGGCAAACCCTGTAAAGCGTTTGAGAACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 6615 0.436 MQSGGGPGGGPGRNPAGRAASTSSAAASPSSSSSAASHLESLQQQQQQQQIGSRQSFQQQLLRKPEGSEAFLAYQAGLQGIFGSNNFPPSSMQLPQQSRKFVDLAQHGSNQGQGVEQQMLNPAQAAYFQYALQASQQKSALAMQQPKMGMMGSSSVKDQDMRMGNLKMQDLMSMQAVNQAQASSSRNSSDHFNHGEKRVEQGQQLAPARKSEGNPSSQGPAVGNIVPGNIIRPVQALANQQNTSNTMNNQIAMSAQLRAMQAWAHEQNIDMSHPANAQLMAQLIPLMQSRMVQQPKVNDTNSGAQSSPVPVSNQQVTSPAVASESSARANSSGDVSAQSGSVKGRQMAPPNHLSPPISAGIASTSSDMTVQQFSLHSRDTQGSLKQSVLTGNGMHSQQTSANMNIGADHPLNAKASSSCPEPAKMQYIRQLNQSASQGGGLTNEGGSGNYTKTQAGPSQTPQQRNGFTKQQLHVLKAQILAFRRLKKGEGALPQELLRSINPPPLDLQVQQPIHSGGAQNQERSAGNIVAEQQRQNEANAKDSQHIPSISGNISSKKEAFMRDESNPVTAVYMQATSPVIKESAGREEQQSVVCSAKSDQENEHGINRTSVRNELVLDKGKAVAAPQSSVADTVQPNKPSQASTVAQSKDMASTGKYHGPLFDFPFFTRKHDSFGSSMMLNNNNNLSLAYDVKELLFEEGMEVITKRKTENLRKIEGLLAVNLERKRIRPDLVLKLQIEGKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVHASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVAKYHERMLKEFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIQGDAAERYAVLSTFLTQTEEYLHKLGSKITTAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVSEKVVRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGSSQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCKMSALQSAIYDWVKSTGTLRLDPEGEESKIQKNPLYQAKEYKTLNNRCMELRKTCNHPCLNYPLFNELSTNLIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLNLRRFVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDEFVGKDRYIGSVESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQENVHNVPSLQEVNRMIARSDEEVELFDQMDEELDWPEEMMQHDEVPQWLRANTREVNAAIASLSKRPSKNILLGGSVGMDSEVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNEYSAQEEGEIGEFEDDVYSGADGHQLEEDGLTSDAGYEIARSSENARHNHVAEEAGSSGSSSDNQRLVQTVSPSVSAQKFGSLSALDARPSSISKIMGDDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRQAVERLEDKSGSEMKSLQRGESSLLVDYKYKMQTRIDTESKSFIDNNAGKHDKNATTLKNKQKLPSRKVANTSKLHGSPQSNRLNCSSGPSDDGGEHPRESWEGKPLNSNGSSVHGTKTTEIIQRGCKNVISKLQRKIDKEGHQIVPLLTDLWKRIENSGYAGGSGSSLLDLRKIDQRIDRMDYTGVMELVFDVQFMLRGSMHFYGYSYEVRSEARKVHDLFFDILKIAFPDTDFGEARCAISFSSQIPAGTTTSPRQVTVGPSKRHRATNDVETNPIPSQKLPQSGAASNGESSRFKGSKTGSGSSSAREQPQQDNHPMLTHPGQLVVCKKKRNDREKTLGKGRSGSACPVSPPCAIRSPGSGSNPKDGRWGSQPSQHSNGSAGSVGWANPVKRLRTDSGKRRPSHM* 2205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1689 1715 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1 62 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1838 1854 - -
Vra4g0789 2204 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1319 1496 IPR001650 -
Vra4g0789 2204 SUPERFAMILY Bromodomain 1966 2025 IPR036427 GO:0005515
Vra4g0789 2204 Coils Coil 1626 1646 - -
Vra4g0789 2204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1559 IPR027417 -
Vra4g0789 2204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1218 IPR027417 -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1756 1815 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 2163 2183 - -
Vra4g0789 2204 SMART QLQ_2 465 502 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra4g0789 2204 ProSiteProfiles QLQ domain profile. 466 502 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra4g0789 2204 SMART helicmild6 1345 1429 IPR001650 -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 2045 2204 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 17 62 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 207 223 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 2045 2061 - -
Vra4g0789 2204 SMART bromo_6 1912 2027 IPR001487 GO:0005515
Vra4g0789 2204 SMART ultradead3 984 1173 IPR014001 -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1855 1885 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1901 1915 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1838 1915 - -
Vra4g0789 2204 Gene3D - 979 1227 IPR038718 -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 295 345 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 434 465 - -
Vra4g0789 2204 CDD SF2_C_SNF 1314 1439 - -
Vra4g0789 2204 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1000 1165 IPR014001 -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1623 1651 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 2125 2139 - -
Vra4g0789 2204 PANTHER ATP-DEPENDENT HELICASE BRM 35 2136 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Vra4g0789 2204 PANTHER SNF2/RAD54 HELICASE FAMILY 35 2136 - -
Vra4g0789 2204 Pfam QLQ 467 500 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra4g0789 2204 MobiDBLite consensus disorder prediction 2069 2117 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1699 1715 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1795 1811 - -
Vra4g0789 2204 Pfam Helicase conserved C-terminal domain 1318 1429 IPR001650 -
Vra4g0789 2204 Gene3D - 1228 1438 IPR027417 -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1763 1784 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 295 362 - -
Vra4g0789 2204 Gene3D - 790 863 - -
Vra4g0789 2204 Coils Coil 742 762 - -
Vra4g0789 2204 Pfam SNF2-related domain 991 1295 IPR000330 GO:0005524|GO:0140658
Vra4g0789 2204 MobiDBLite consensus disorder prediction 1596 1653 - -
Vra4g0789 2204 MobiDBLite consensus disorder prediction 176 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0789 Vra-Chr4 14665985 14677923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0789 970 1454 RAD5 or RAD16-like Gene Family AT1G02670 25.673 3.37e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra4g0789 SNF2_N 1.6e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0789 - - gmx:100811608 3655.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0789 4 14665985 14677923 Vra4g0789 4 14665985 14677923 ECH
Vra4g0789 4 14665985 14677923 Vra9g0561 9 6211523 6224571 PCT