Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0787 ATGGGATATCTGAGCAAAGCTTCCAAAACCCTAAGGCAATCGAATTACTTAGCGTTGTTATGCAATTTCAATTTCTATTTCAACCCATTAAACAGCAGAATAACCCATGAACGCTTTCCTGTGAGGCGTGAACTGTTCTATTCACAGTCACGCCAATACAGCACCTCCACGAGAGAGAAAAGCACCATAGATTTGACACAATACCCTCCAGAGCTCGTTAGAAACTTCTCAATCATTGCGCATGTGGATCATGGCAAGTCCACCCTCGCTGATCGACTTCTAGAACTCACTGGAACAATTAAGAAAGGCCATGGCCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGAGGAATCACGGTTAAAGCCCAGACAGCAACAATGTTCTATAAGCACAGTGTAAATGGTGATGATTTCAGTAATGGAAAGGAGTCACCCAGTTTTTTGCTGAATCTTATTGATACTCCTGGACATGTTGATTTTAGTTATGAAGTTTCAAGATCATTGGCAGCTTGTCAAGGTGTGCTTTTGGTTGTTGATGCTGCTCAGGGAGTCCAAGCTCAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTAACAATTGTGCCGGTTATAAACAAGATTGATCAGCCAACTGCTGATCCTGATCGTGTTAAAGCCCAACTAAAATCAATGTTTGATCTTGATCCAAATGATGCACTGCTAACATCTGCTAAAACTGGAGAGGGTCTTGAGCAAATCCTTCCGGTAGTCATAGAGCGTATACCTGCCCCTCCTGGTAGGAGGGAATCTCCTCTTCGCATGCTTTTACTTGATTCATATTATGATGAATACAAAGGGGTAATATGTCATGTTGCTGTTGTTGATGGTGTCCTGAGCAAGGGGGATAAGATTTCATCTGCAGCTACTGGTCGGTCTTATGAAGCTTTAGATGTTGGCATCATGCATCCTGAACTTACACCTACTGGTATCTTACTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGAACAACCAAAGAGGCCCGTGTTGGTGATACAATTTACCATACTCGGACTTCTGTAGAGCCTCTTCCAGGGTTCAAGCCAGCGAAACATATGGTGTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCTCTAAATCACGCAATAGAGAGGTTGACATGCAATGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACTGCTCTAGGTCTGGGGTTCAGGTGTGGGTTTTTAGGCCTTCTGCACATGGATGTTTTTCATCAAAGACTTGAACAGGAATACGGAGCTCATGTTATCTCAACTGTTCCTACCGTGCCTTACACATTTGAGTTTTCTGATGGAAGCAAGTTAGAAGTTCAGAATCCTGCTTCATTACCCTCTAATCCCAAGCAAAAAATGACAGCCTGTTGGGAACCTACTGTAATAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGGGGTCAGCAGTTGGAGTATTCATTCATTGACAGTCAACGGGTATTCATGAAGTACCGCCTGCCTTTGAGAGAAATTGTTGTTGACTTTTATAATGAATTGAAGAGTATAACATCAGGCTATGCTTCATTTGATTACGAAGACTCAGATTATCAACAAGCTGATATGGTAAAACTTGATATTCTCTTGAATGGAGAACCAGTTGATGCAATGGCAACCATAGTCCATAACACGAAAGCATACCGCGTTGGGCGTGAATTGACAGAGAAATTGAAAACTGTCATTGACAGGCAAATGTTCGAGATATCCGTACAAGCTGCCATTGGGTCAAAAATCATAGCAAGGGAGACGATTTCTGCTATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGCGATGTTACTCGAAAAAGGAAGCTATTGGAGAAGCAAAAAGAAGGAAAGAAGAGAATGAAGCGAGTTGGTTCTGTTGATATACCACAAGAGGCATTTCACCAACTACTGAAAGTTTCTTAG 2031 0.4205 MGYLSKASKTLRQSNYLALLCNFNFYFNPLNSRITHERFPVRRELFYSQSRQYSTSTREKSTIDLTQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHSVNGDDFSNGKESPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPNDALLTSAKTGEGLEQILPVVIERIPAPPGRRESPLRMLLLDSYYDEYKGVICHVAVVDGVLSKGDKISSAATGRSYEALDVGIMHPELTPTGILLTGQVGYVVSGMRTTKEARVGDTIYHTRTSVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYTFEFSDGSKLEVQNPASLPSNPKQKMTACWEPTVIATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQQADMVKLDILLNGEPVDAMATIVHNTKAYRVGRELTEKLKTVIDRQMFEISVQAAIGSKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHQLLKVS* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0787 676 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Vra4g0787 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 284 IPR027417 -
Vra4g0787 676 CDD EF4_II 270 355 - -
Vra4g0787 676 Gene3D - 560 634 IPR038363 -
Vra4g0787 676 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Vra4g0787 676 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Vra4g0787 676 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Vra4g0787 676 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Vra4g0787 676 SUPERFAMILY Translation proteins 261 357 IPR009000 -
Vra4g0787 676 CDD EF4_III 371 446 - -
Vra4g0787 676 Gene3D - 446 559 - -
Vra4g0787 676 CDD lepA_C 481 560 IPR035654 -
Vra4g0787 676 PANTHER TRANSLATION FACTOR GUF1-RELATED 59 674 IPR006297 GO:0005525
Vra4g0787 676 Gene3D Translation factors 266 363 - -
Vra4g0787 676 Gene3D - 71 264 IPR027417 -
Vra4g0787 676 Pfam Elongation factor Tu GTP binding domain 73 260 IPR000795 GO:0003924|GO:0005525
Vra4g0787 676 Pfam GTP-binding protein LepA C-terminus 568 674 IPR013842 -
Vra4g0787 676 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 263 IPR000795 GO:0003924|GO:0005525
Vra4g0787 676 TIGRFAM small_GTP: small GTP-binding protein domain 77 251 IPR005225 GO:0005525
Vra4g0787 676 SUPERFAMILY EF-G C-terminal domain-like 372 449 IPR035647 -
Vra4g0787 676 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 59 674 - -
Vra4g0787 676 TIGRFAM lepA: elongation factor 4 73 675 IPR006297 GO:0005525
Vra4g0787 676 Hamap Elongation factor 4 [lepA]. 66 676 IPR006297 GO:0005525
Vra4g0787 676 SUPERFAMILY EF-G C-terminal domain-like 480 574 IPR035647 -
Vra4g0787 676 Pfam Elongation factor G C-terminus 481 565 IPR000640 -
Vra4g0787 676 Gene3D Elongation Factor G (Translational Gtpase), domain 3 364 445 - -
Vra4g0787 676 CDD LepA 74 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0787 Vra-Chr4 14642012 14647333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0787 73 214 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 2.18e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0787 K21594 - gmx:100781092 1239.94