Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0775 ATGGCAGTGGTGAGTCCTGTGCTTGCAACATCACAAAGGATGGGTTCTGTGAGGTCACCTTCTCATGCTAGTGGGGAAATTTTGGAGGAGCCTAATCCAGGTGTGGTTGATCAGCCAATCTATGTTGCTGTGGCAAAAGAAGTGAAGGAGAGCAGATCAAATCTGATATGGGCAATACAACACTCCGGAGGAAAGAGGATTTGCATTCTTTATGTTCATGTTCGTGCAACAATGATCCCCCTACTGGGAGGTAAATTCCCTACAAGTGCACTAAAAGAGGAGCAGGTTCAAGCATACTGGGAAGAAGAAAAACAAAACATGCATAGGACTCTGGATGAATATCTTCAAATCTGTCAACGGATGGGGGTGCGAGCAGAAAAATTGCATATTGAAATGGATAGCATTGAAAAAGGAATTATAGAGCTTGTATCTCAGCATGGCATCCGAAAGCTTGTAATGGGAGCAGCATCAGATAAGTACTATAATAGGAGAATGATGGACCTTAGATCTAAGAAAGCCATATATGTGTGTAAACAAGCTCCAGCTTATTGTCACATACAGTTTATCTGCAAAGGGCACCTTATACACACAAGGGATCACAGTTTGAATGAAGGTAATGTAGAGGTTGCATCTCCTTTGGTGCAGCAAGTGCCAAACTCTGTGAGAACTTTCAGATCACAGTCTGTTACACTGGGGCAAGGTCGCCGAGGAAATCTAACCAATGATGCGCGCAGACTAAGGTCTGCCAGTGATGGACATGTAGCAACCTTTCCAGCTGTTTCTTCTCCAGAAGAAACTGTAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGAGAGGCTGTCAATGATGAGTCCTTCTGGCTTGTCAATATCCTCTGAGAGTGCAGTTGATCTAGCTTTGACCCCAGGATTAATTACTGAAGGCAGTGAGAATGCATTAGAGTTGACTATGAGTCAGCTGGTTATAGAGGATCTTCATCATTCATCTCCTCCTAGTACACTGCAGGATGGTGGAATAGATGATACTATCTACGACCAGCTTCAACAAGCTATGACGGAAGCGGAGGATGCTTCACTAACTGCATATAAAGAAACTGTTAGACGTAGGAATGCTGAAAAAGAAGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACGGAGGAGTTGAACCTGAGGAAATTGGCAGAGGAAGAACTTAGGAAAGAAAAAGAAGAACTTGAGAATGCTAAGAGACTGAGAGACAAAGTTAGGGAAGAACTCCACCTTGCCCTTGATCAGAAGGCATCTCTGGAGAGTCAGATTGCATCATCTGAACTTATCATAAAGGAGCTGGAGCAGAAGATTGTATCTGCTGTGGATCTGTTACAGAGCTACAAGAATGAACGAGAGGAATTGCAGATTCAGCGTGATAATGCTTTGAGAGAGGCCGAAGAATTGAGGAAAAAGCAAGGAGAGGCCTCAAGCTCCCATGTCCCTCAATTGTTCTCAGAATTCTCATTTTCAGAGATTAAAGAAGCAACAGATAACTTCAATCCATCCTTAAAAATTGGTGAAGGTGGATATGGAAGTATATTTAAAGGTGTCTTGAGTTACACTGAGGTGGCTATAAAAAGATTGCACTCTGACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGCTGAGCAAACTAAGGCATCCCAATCTTATCACACTCATTGGAGCCTGCCCAGATGCATGGGCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTCGAAGACCGCCTTGCCTGCAAGGATAATACCCCTCCATTATCATGGCAAACTCGAATCCGTGTTGCTACTGAACTATGCTCTGCCCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTTCATGGTGACTTGAAACCGTCCAACATTCTCCTTGATGCAAACCTTATTAGCAAGCTTAGTGACTTTGGAATATGTCGTATATTATCGAACTGTGAGGGTTCCAGTAGCAATTCTACAGAGTTTTGGAAAACTGACCCAAAGGGAACATTTGTCTACATGGATCCTGAGTTTCTTGCCTCAGGGGAACTTACTCCGAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACAGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGATACTGGAAAGTTGAAATCCCTTTTGGATCCTGTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAATTGGCTCGCTTGGCTTTGAGATGTTGTGATATGAACCGAAAGAGCCGTCCAGATCTTTATTCTGATGTCTGGAGGATACTAGATGCAATGAGAGTTTCTTCTGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGACTTTCACAACCTCCATCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCAGCAGATGGTTTTACTTATGAAGCTGAGGCTATACGAGGATGGCTTGATGGTGGTAATGACAACTCACCAATGACTAATGGTAAGCTTGCACATCACAATCTTGTTCCCAATCGTGCTCTTCGCTCTGCAATCCATGACTGGCTTCAAAACCACTGA 2643 0.434 MAVVSPVLATSQRMGSVRSPSHASGEILEEPNPGVVDQPIYVAVAKEVKESRSNLIWAIQHSGGKRICILYVHVRATMIPLLGGKFPTSALKEEQVQAYWEEEKQNMHRTLDEYLQICQRMGVRAEKLHIEMDSIEKGIIELVSQHGIRKLVMGAASDKYYNRRMMDLRSKKAIYVCKQAPAYCHIQFICKGHLIHTRDHSLNEGNVEVASPLVQQVPNSVRTFRSQSVTLGQGRRGNLTNDARRLRSASDGHVATFPAVSSPEETVGFSTPRDRMGTEVSSDESERLSMMSPSGLSISSESAVDLALTPGLITEGSENALELTMSQLVIEDLHHSSPPSTLQDGGIDDTIYDQLQQAMTEAEDASLTAYKETVRRRNAEKEAFEAIRKAKASESLYTEELNLRKLAEEELRKEKEELENAKRLRDKVREELHLALDQKASLESQIASSELIIKELEQKIVSAVDLLQSYKNEREELQIQRDNALREAEELRKKQGEASSSHVPQLFSEFSFSEIKEATDNFNPSLKIGEGGYGSIFKGVLSYTEVAIKRLHSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDAWALVYEYLPNGSLEDRLACKDNTPPLSWQTRIRVATELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCEGSSSNSTEFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPVAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRVSSGGTNSFGLSSEGLSQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGNDNSPMTNGKLAHHNLVPNRALRSAIHDWLQNH* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0775 880 ProSiteProfiles U-box domain profile. 809 880 IPR003613 GO:0004842|GO:0016567
Vra4g0775 880 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 51 159 - -
Vra4g0775 880 Coils Coil 397 494 - -
Vra4g0775 880 PANTHER OS02G0152300 PROTEIN 27 879 - -
Vra4g0775 880 Gene3D Transferase(Phosphotransferase) domain 1 595 798 - -
Vra4g0775 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Vra4g0775 880 ProSiteProfiles Protein kinase domain profile. 522 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0775 880 Pfam Protein kinase domain 526 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0775 880 Gene3D Phosphorylase Kinase; domain 1 492 594 - -
Vra4g0775 880 SMART Ubox_2 813 876 IPR003613 GO:0004842|GO:0016567
Vra4g0775 880 SUPERFAMILY RING/U-box 804 879 - -
Vra4g0775 880 CDD STK_N 39 192 - -
Vra4g0775 880 Pfam U-box domain 811 880 IPR003613 GO:0004842|GO:0016567
Vra4g0775 880 CDD RING-Ubox_WDSUB1_like 814 855 - -
Vra4g0775 880 SMART serkin_6 522 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0775 880 Gene3D HUPs 38 181 IPR014729 -
Vra4g0775 880 MobiDBLite consensus disorder prediction 261 296 - -
Vra4g0775 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Vra4g0775 880 ProSitePatterns Protein kinases ATP-binding region signature. 528 549 IPR017441 GO:0005524
Vra4g0775 880 SUPERFAMILY Protein kinase-like (PK-like) 499 780 IPR011009 -
Vra4g0775 880 PANTHER U-BOX KINASE FAMILY PROTEIN 27 879 - -
Vra4g0775 880 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0775 Vra-Chr4 14539604 14546890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0775 1 880 U-box Gene Family AT2G45910 53.378 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra4g0775 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0775 - - gmx:100807515 1491.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0775 4 14539604 14546890 Vra4g0775 4 14539604 14546890 ECH
Vra9g0568 9 6342626 6348151 Vra4g0775 4 14539604 14546890 ECH
Vra4g0775 4 14539604 14546890 Vra9g0568 9 6342626 6348151 PCT