Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0751 ATGTTGGGTTCAGGTACCAATTTGGTGACCACGGTCATTGGGTTTGGCATGAGTGCCACTTTCATTGTGTTTGTCTGCACCAGAATCATATGTGGAAGGCTAAGAGGAGTTGTTGAATCTCGGATGGTGTATGAGATTGAATCAAGAATTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGAATCAGAACCTGTTCTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAAGCTTTCAGTTCCCTTGAACATACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTCTTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGTATTGATATATGGCTGAGAAAGCAATCTACCTGCCCAGTATGCCGTCTGCCATTGAAGAACTCTTCTGAAACAAAACATGCAAGACCTGTGACGTTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGAAAGAAATGAAAATGCAGAGAGACATGATGAACCTACTCCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGTGAAGAAGGAGCAAGGCAATGA 582 0.4244 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGVVESRMVYEIESRIDIEQPEHHVNDPESEPVLLDAIPTLKFNQEAFSSLEHTQCVICLADYKEREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHARPVTFTMSQSLDESHTSERNENAERHDEPTPTAASNSLQPTSGEEGARQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0751 193 MobiDBLite consensus disorder prediction 173 193 - -
Vra4g0751 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Vra4g0751 193 SMART ring_2 90 131 IPR001841 -
Vra4g0751 193 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Vra4g0751 193 MobiDBLite consensus disorder prediction 142 157 - -
Vra4g0751 193 PANTHER OS11G0150450 PROTEIN 1 177 - -
Vra4g0751 193 PANTHER OS02G0676500 PROTEIN 1 177 - -
Vra4g0751 193 MobiDBLite consensus disorder prediction 142 193 - -
Vra4g0751 193 MobiDBLite consensus disorder prediction 158 172 - -
Vra4g0751 193 CDD RING-H2_EL5_like 89 132 - -
Vra4g0751 193 Pfam Ring finger domain 89 132 IPR001841 -
Vra4g0751 193 SUPERFAMILY RING/U-box 80 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0751 Vra-Chr4 13841708 13843959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0751 79 192 C3H Transcription Factor Family AT4G10160 37.607 4.72e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0751 - - gmx:100780922 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0751 4 13841708 13843959 Vra4g0751 4 13841708 13843959 ECH