Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0748 ATGGGAGTTGGTGGTAATTTCTGGGAGCTGCTAAAGCCCTATGCGCGTCGCGAGGGTTTTGATTTCTTGAGGAACAAGCGAGTTGCCGTGGACCTATCATTCTGGATTGTTCAGCATGAGAATGCCATGAAGGCCACCCATGTCAGAAAACCTCACCTCAGACTTACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGGGCACTTCCTGTGTTCATTGTTGACGGGACTCCATCACCATTGAAAGCACAGGCCAGGATTGCAAGATATTTTGGGTCTTGTGGCATTGAGCTGACTAGCTTGCCGGTCTCCGAAGGTGTTTCAGCAGAAAGGAGCAGCATGTTTTCAAGTCGAGTTCAAGAATGTGTGGAACTGGTCAAACTACTTGGAATGCCTGTACTACAGGCTAAAGGAGAGGCTGAAGCACTCTGTGCGCAATTAAATAGTGAAGGTCATGTAGATGCTTGCATCACAGCTGACAGTGATGCATTCCTCTTTGGGGCAAAATGCATTATAAAACGTTTCTGTCCCAATTCCAAAGAACCATTTGAATGCTACAACATGTCAGATATTGAAGCTGGACTTGGATTGAAGAGGAAACACTTGATAGCTATCTCTCTTTTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGAATTGGGCTTGATAATGCACTTCATTTTGCTAAAGCTTTTAATGAAGATGATATATTGAATAGATTACAGGAGATAGGCAAAGGGGATACTTCACAAATTCCCAGCTGCACCAAATTTGAGGACAACATAGATGTTGATGGAAACTGCCCGAATATAAAACAACCTCATTGCTCATTATGTGGGCATCCTGGCAGCAAGAAAGATCATATGAAATTTTCTTGTGAATCCTGTGTCACAAAGGATGATGAGGGCTGCCAGAGAAAACCAGAGGGTTTTAAATGTGATTGCTGCTCATGTGTTTTGAATAGGAGACACAAGGAGCAGAAACGAGAGGAAAATCGGTACTCAAAAATTTGTCACAAAATTGCAGAGGAGCCAAACTTTCCCAAAGATGAAATCATTGACATGTACTTATGCAATGACAATGGTTACTTTTCAGCAAGTGATGGGCCTCGGATCATATGGGGAAAACCCAATATTGAGATGCTGATTGATTTTTTAAATTTTCATCAGTGTTGGGAACCATCCTACATTCGACGGACTATGTTTCCTATGATGTCTACTATCTTTTTGAGAGATATGTCTACACCTACGGGAGAAACTTTGTTATTTGGGCAGTATGAGTTTGATTCGGTTGAACGTGTGAAGATGAGATATGGATATCAGTTTTATGTGGTTAAGTGGAAACGTGCAGGGGTAAACATTAACACCAGCAAAGTTCCATCAAATGAATCAAGTGTGCAACAAGATGTAGTAGAGCTTGATGAAATGGTGGATCTACTGGACGATGCCCCTGAGATTCATGTAGATGGATGTAGTTTTCTGTTTACAGATGAAAACATGGACCTAGTGGGGACTGCTTTTCCAGCAGAAGTCAAAAGCTTTTTGCAGGAGCAGGAAAGGAAAAGGAGAAAGAACCCAAAATCAAGGTTCCAAGAAAATGAAAAACCAGCTTCTCCAAACTCAAGAAGTACTCAGCTAAGCATCACAGAGTTCTTTCCATCAACCAAAATTAAACATCGTCAATCAAAACAAAGAGAAGAATCATCCAACGATGCTGATAGTGAGGGGAGCAAGAGTTCAAAAATGAAAAGAAACATGTCTAATTCTGACAAGCTTCCAAAATCTGTGAGGCGTCGCCTTTTGTTTGACTAG 1818 0.4158 MGVGGNFWELLKPYARREGFDFLRNKRVAVDLSFWIVQHENAMKATHVRKPHLRLTFFRTINLFSKFGALPVFIVDGTPSPLKAQARIARYFGSCGIELTSLPVSEGVSAERSSMFSSRVQECVELVKLLGMPVLQAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCIIKRFCPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDMNGVRGIGLDNALHFAKAFNEDDILNRLQEIGKGDTSQIPSCTKFEDNIDVDGNCPNIKQPHCSLCGHPGSKKDHMKFSCESCVTKDDEGCQRKPEGFKCDCCSCVLNRRHKEQKREENRYSKICHKIAEEPNFPKDEIIDMYLCNDNGYFSASDGPRIIWGKPNIEMLIDFLNFHQCWEPSYIRRTMFPMMSTIFLRDMSTPTGETLLFGQYEFDSVERVKMRYGYQFYVVKWKRAGVNINTSKVPSNESSVQQDVVELDEMVDLLDDAPEIHVDGCSFLFTDENMDLVGTAFPAEVKSFLQEQERKRRKNPKSRFQENEKPASPNSRSTQLSITEFFPSTKIKHRQSKQREESSNDADSEGSKSSKMKRNMSNSDKLPKSVRRRLLFD* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0748 605 Pfam XPG N-terminal domain 1 87 IPR006085 GO:0004518
Vra4g0748 605 Gene3D - 198 260 - -
Vra4g0748 605 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 414 IPR036279 -
Vra4g0748 605 MobiDBLite consensus disorder prediction 558 605 - -
Vra4g0748 605 CDD PIN_GEN1 2 202 - -
Vra4g0748 605 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Vra4g0748 605 Gene3D - 3 197 - -
Vra4g0748 605 MobiDBLite consensus disorder prediction 518 533 - -
Vra4g0748 605 SMART xpgineu 128 198 IPR006086 GO:0004518
Vra4g0748 605 SMART xpgn3 1 97 IPR006085 GO:0004518
Vra4g0748 605 PANTHER FLAP ENDONUCLEASE GEN-LIKE 1 1 592 - -
Vra4g0748 605 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 592 IPR006084 -
Vra4g0748 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Vra4g0748 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Vra4g0748 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Vra4g0748 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Vra4g0748 605 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Vra4g0748 605 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Vra4g0748 605 MobiDBLite consensus disorder prediction 518 605 - -
Vra4g0748 605 MobiDBLite consensus disorder prediction 534 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0748 Vra-Chr4 13825237 13830545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0748 1 313 Core DNA Replication Machinery Family AT5G26680 25.575 9.88e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0748 K15338 - gmx:100779848 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0748 4 13825237 13830545 Vra4g0748 4 13825237 13830545 ECH