Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0724 ATGGATATGGCTTGTGGTTTTCCGCAGTCAAGGGTGTTGCACGGAGGTATGGGGACGAGTTACAGACACAGATCAGTTGGTCAGTTAGGTTGTTTTGATTTTAGAGGGAGAGGTTTTGGTTGTGCTGGTTTTGACAGAAGTGTTTCAAAATTTCGTGTTAGTGGAGTGAGTGCTTCTGCTTGTTGGAGTAATTCCAGGGTGTTTACTGGTAGGGAGTTTAAAGTTTTGAATATTAAGAGAAGTTTGTCTTGTAAGAATAACAATCTTTTTACGGGCTCTAGAGTGATTTGGTCCAAGTGCCAGGGTAATGATTCTTTAGCTTATGTTACTGGCAACGGTCGGACTGTTGATTATGTGGAAGGTTCAGATGAGGATGCAGGATTGGGGCCTGTTTCTAGTGTTGAACTTGATGCACCTTTGGAAGAAGAAGAGCAAGCCGGAAGAAAAGAGGGAGGGAGTGAAATAGGATCAGAGGAACTAAGTGTGGATGAATTGAAAGAACTATTGCAAAAGGCCAGGAAGGAGCTAGAAGTAGCTCAAATAAATAGTACCATGTTTGAGGAAAAGGTTAAAAAAATATCAGAGACTGCCATTTCTTTGCATGATGAAGCTGTGATTTCTTGGAATGCTGTTAATTCTACCCTTGACACCATCAAAGAAGTAGCTAATGAAGAGCTTCCGGCCAAAGAAGCTGTCCAAACTGCAACAATGGCTCTTTCATTAGCTGAGGCAAGACTTCAAGTAGCCATAGAATCTTTGGAGCCTACAAAAGAAGTTCCTGATTCAACACAAGGTTCTAATGAGAGCAATGGTGATAAGGACGTGGAGGAACATGAGAAAGCTATTTTGTTTGCTGAAGCAGATATCAAGGAATGCCAGGCTAACTTAGCCAATTGTGAGGCAGAGCTGAAGCGCTTGCAAAATAGGAAGGAAGAGTTGCAGAAGGAAGTGAGCAAATTGCAAGAAATTGCTGAAAATGCTCAGCTGAATGCTGTGAAAGCTGAAGAGGATGTTACAAACATAATGCTTTTGGCTGAGCAAGCTGTTGCCTTTGAACTTGAGGCAACAAAACGTGTAAATGATGCAGAGATTGCCTTACAACGAGCAGATAAGTCTAATTCTAATTCAAATACTGATACGATAGAAACTATCCAAGCACCGGATGTTGAGGCTATTCTTGAGGAGGAAAAAGTGGTTAACTATTTTTCTGGTGATGTCACTGTTGAAAGAGACAAAGAATTGTCAATTGATGATGACTATTTGGTTGAAAATTTATCACCTGAAACACTATCTGATAAAGCCAACCCAATTTTGGAAGACAAAACAGAGTCTGATTATTTAAGTGATAATGAGAATGTCGTGCAAGCAAAAAAGCAGGAAACACAGAAAGATTTAACCAAAGATAGTTCACCTTTTGCTCCCAAGGCATTATTGAAAAAGTCTTCTCGATTCTTTTCTGCATCATTCTTTTCTTTTACCGAAGATGGGACTGAGTTCACACCAGCATCAGTCTTTCAGGGCCTTATAATATCTGTACAGAAGCAGTTGCCGAAGCTGATTTTTGGGTTCTTGTTAATGGGAGCAGGGGTTACCTTCTTTGCTAATAAAGTGGATAGGAATGCTCAGCTGCTTCCCCAGGCAGACGTTATCATGACTAGTGTTGAAGAAGTTTCCTCTAGTGCAAAGCCGCTGGTTAGACACCTACAGAAACTGCCCAAGAAAATCAAGAAAATCATTGCGTCATTACCTCACCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTCTGGCTATTACTTGCAAGTGTTATATTTGTGCCAATATTCCAGAAAATCCCTGGAGGCAGTCCTGTTCTTGGCTATTTGGCTGCTGGTATCTTGATTGGGCCATATGGTCTCTCTATCATTCGTCACGTACATGGCACAAAAGCAGTAGCTGAATTTGGAGTTGTTTTCCTTCTATTCAATATTGGCCTGGAGCTCTCTGTCGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCACAGGTCTTGGCAACTGCTGTAGCTATTGGTTTGGTGGTTCATTTTATTTGTGGCCAACCTGGTCCTGCTGCTATTGTTGTTGGGAATGGCCTTGCATTATCATCCACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGTACATCACGGCATGGCCGAGCTACTTTTTCTGTGTTACTCTTTCAGGATTTGGCTGTTGTGGTGTTGCTAATTCTCATACCTCTTATTTCTCCCAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCTATTGCTGAAGCACTTGGAATGGCTGCTGTTAAGGCAGCAGTTGCAATCACTGCCATAATTGCAGGGGGACGATTGCTCCTTCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCTGAAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACGGCCAGGGCAGGACTTTCCATGGCATTAGGAGCCTTTTTGGCTGGTTTACTGCTGGCAGAAACTGAATTTTCATTACAGGTTGAATCTGACATTGCTCCATATCGTGGCCTTCTTTTAGGGCTATTCTTTATGACGGTTGGAATGTCAATAGATCCAAAACTTCTTGTATCAAACTTCCCAATCATCGGAGTTACACTAGGACTCTTAATATGTGGCAAGACTATCTTGGTTTCTTTGATGGGTAGAATGTTTGGGATTTCCTTCATTTCTGCCATAAGAGCTGGTCTTCTTCTTGCTCCTGGGGGAGAGTTTGCATTTGTGGCTTTTGGTGACGCCGTTAATCAGGGCATAATGTCTTCCCAGCTATCATCTTTGCTTTTTCTTGTTGTGGGCATTTCAATGGCCATCACACCATGGCTAGCAGCAGGAGGCCAGCTGATTGCTTCCCGCTTTGAGCAGAATGATGTTAGAAGACTATTACCTGAAGAAAGTGAGACAGATGATCTGCAAGATCATATTATTATTTGTGGATTTGGACGAGTGGGCCAGATCATTGCCCAACTTCTTTCTGAGCGTCTTATTCCGTTCGTCGCACTAGATGTAAGGAGTGATAGAGTTGCAGTTGGCCGTGGTCTCGGTCTGCCTGTGTATTTTGGGGATGCTGGTAGTAGAGAGGTCTTACATAAACTTGGAGCTGAAAGGGCATGTGCTGCAGCAATAACACTCGATACACCTGGTGCAAATTATAGAACAGTCTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACCTTTGTCCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCTGGAGCCACTGCTGTTGTACCAGAGACTTTGGAACCAAGTCTTCAACTTGCAGCTGCTCTTCTTTCTCAGGCCAAACTCCCCACGTCGGAGATTGCAGCAACTATAAATGAATTCAGAACTCGACATCTGGCTGAGCTCTCGGAGCTGTGCGAAGCAAGTGGAAATTCTCTAGGTTATGGATATAATAATAATAATAAAATTGCGGGCAAACCAAAATCCCAATCAACAGATTCATTAGATGAGACCCCTGTTTCTGAAGGCACACTGACAATATGA 3606 0.4268 MDMACGFPQSRVLHGGMGTSYRHRSVGQLGCFDFRGRGFGCAGFDRSVSKFRVSGVSASACWSNSRVFTGREFKVLNIKRSLSCKNNNLFTGSRVIWSKCQGNDSLAYVTGNGRTVDYVEGSDEDAGLGPVSSVELDAPLEEEEQAGRKEGGSEIGSEELSVDELKELLQKARKELEVAQINSTMFEEKVKKISETAISLHDEAVISWNAVNSTLDTIKEVANEELPAKEAVQTATMALSLAEARLQVAIESLEPTKEVPDSTQGSNESNGDKDVEEHEKAILFAEADIKECQANLANCEAELKRLQNRKEELQKEVSKLQEIAENAQLNAVKAEEDVTNIMLLAEQAVAFELEATKRVNDAEIALQRADKSNSNSNTDTIETIQAPDVEAILEEEKVVNYFSGDVTVERDKELSIDDDYLVENLSPETLSDKANPILEDKTESDYLSDNENVVQAKKQETQKDLTKDSSPFAPKALLKKSSRFFSASFFSFTEDGTEFTPASVFQGLIISVQKQLPKLIFGFLLMGAGVTFFANKVDRNAQLLPQADVIMTSVEEVSSSAKPLVRHLQKLPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAVAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAVAIGLVVHFICGQPGPAAIVVGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGMAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPIIGVTLGLLICGKTILVSLMGRMFGISFISAIRAGLLLAPGGEFAFVAFGDAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRRLLPEESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRGLGLPVYFGDAGSREVLHKLGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAALLSQAKLPTSEIAATINEFRTRHLAELSELCEASGNSLGYGYNNNNKIAGKPKSQSTDSLDETPVSEGTLTI* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0724 1201 Pfam TrkA-N domain 1003 1116 IPR003148 GO:0006813
Vra4g0724 1201 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 601 881 IPR004771 GO:0006812|GO:0008324|GO:0016021
Vra4g0724 1201 ProSiteProfiles RCK N-terminal domain profile. 1002 1124 IPR003148 GO:0006813
Vra4g0724 1201 Coils Coil 275 337 - -
Vra4g0724 1201 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 1201 - -
Vra4g0724 1201 MobiDBLite consensus disorder prediction 253 275 - -
Vra4g0724 1201 Gene3D - 998 1162 - -
Vra4g0724 1201 Gene3D - 590 978 IPR038770 -
Vra4g0724 1201 Coils Coil 155 189 - -
Vra4g0724 1201 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 999 1140 IPR036291 -
Vra4g0724 1201 MobiDBLite consensus disorder prediction 1178 1201 - -
Vra4g0724 1201 Pfam Sodium/hydrogen exchanger family 600 970 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra4g0724 1201 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 1201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0724 Vra-Chr4 13607942 13625269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0724 1 1201 Inorganic Solute Cotransporters AT4G00630 65.256 0.0 1393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0724 - - gmx:100798822 1910.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0724 4 13607942 13625269 Vra4g0724 4 13607942 13625269 ECH