Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0720 ATGTCATTCACCGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGTACACCTTACCACAAGAACTGCTTCCGATGCAGTCACTGCAAGGGATACCTCACGATGAGCACATACTCTTCAATGGACGGTGTCCTCTACTGCAAGCCACACTTTGAACAGCTTTTCAAGGAATCTGGCAATTTCAGCAAGAACTTTCAGACAGCAAGGTCTTCTGAAAAACAAAATGAGATGAATAAGACCCCCAACCGACTCTCGTCCATGTTCAGTGGAACTCTAGACAAATGTTCAGTTTGCTCAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGAGAATGCTATCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTCACACATTCCTCCTATGCTTCCCTAGACGGTGTCCTCTACTGCAGGCACCATTTCCAACAGCTTTTCATGGAGAAAGGGAACTACCATCATGTACTCCAAGCTGCTGCAAACAGGAAGAATGCCACACCGCCTCCTGAACCAGCCGAAGAAGAAGAAGAACCACCAAAGCCAGAGGAAGCTGAACAGGAAGAAACAGAAGAAAAATCCTAA 630 0.4508 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKNATPPPEPAEEEEEPPKPEEAEQEETEEKS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0720 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vra4g0720 209 Gene3D Cysteine Rich Protein 103 168 - -
Vra4g0720 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vra4g0720 209 PANTHER OS06G0237300 PROTEIN 1 208 IPR045268 GO:0051015
Vra4g0720 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vra4g0720 209 SMART lim_4 105 157 IPR001781 -
Vra4g0720 209 SMART lim_4 9 61 IPR001781 -
Vra4g0720 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vra4g0720 209 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Vra4g0720 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Vra4g0720 209 MobiDBLite consensus disorder prediction 175 209 - -
Vra4g0720 209 MobiDBLite consensus disorder prediction 191 209 - -
Vra4g0720 209 Pfam LIM domain 10 65 IPR001781 -
Vra4g0720 209 Pfam LIM domain 106 161 IPR001781 -
Vra4g0720 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Vra4g0720 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 208 - -
Vra4g0720 209 Gene3D Cysteine Rich Protein 5 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0720 Vra-Chr4 13582908 13584899 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vra4g0720 LIM 8.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0720 - - gmx:100779513 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0720 4 13582908 13584899 Vra4g0720 4 13582908 13584899 ECH