Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0717 ATGGGAAGAACACCATGTTGTGACAAAAAGGGTTTGAAGAAGGGACCTTGGACAGCTGAAGAAGATGAAATTCTTGCTAGTTATATCAAGAAAAATGGTGGCCATGGAAGCTGGCGTTCTCTTCCAAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACAAACTATCTCAGACCTGACATCAAGCGTGGTCCCTTTACTCAAGAGGAAGAAAAACTAGTCATTCAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATAGCTTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCTCGAACTCACGAGCCATTGGTCTCATCTCCATCTTACCCCTTCCACAAGGCACATGCATCTGTGTCCACACGCCACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCTGAGGCCAGGCTCTCAAATGAGTCAATAAGGTTCAGCCACAACACCACCAATCCTAATTCAGATACCAAAACCACTGACTCTGACTACTTTCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTGTTGTTCATCACAAAGCTGATGACAACAAAATCACCACTACCAGCTCCTGCCCCAGTCCCCTCTCTGCAGGATCATCCTCCAACAAGTGTGAGTCAGTTGCAATAAATGCAGATTTGGCTTCCATTGCACAAGAAACCACGCCCTCTAACATTGTGAAACAAGAGTTCGAATGGAGGATTCGTGGATCTGATTCTTCAAGCTCTAATGACATGGAGGATTCATCAGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCTTTTATGTGTCCACTTTAG 927 0.4542 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTQEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPRTHEPLVSSPSYPFHKAHASVSTRHMAQWESARLEAEARLSNESIRFSHNTTNPNSDTKTTDSDYFLRIWNSEVGEAFRNVVVHHKADDNKITTTSSCPSPLSAGSSSNKCESVAINADLASIAQETTPSNIVKQEFEWRIRGSDSSSSNDMEDSSDTALQLLLDFPINNDMSFLEGNSFMCPL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0717 308 Gene3D - 11 68 - -
Vra4g0717 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vra4g0717 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra4g0717 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra4g0717 308 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vra4g0717 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra4g0717 308 CDD SANT 16 62 IPR001005 -
Vra4g0717 308 Gene3D - 70 132 - -
Vra4g0717 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Vra4g0717 308 SMART sant 67 115 IPR001005 -
Vra4g0717 308 SMART sant 13 64 IPR001005 -
Vra4g0717 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra4g0717 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra4g0717 308 CDD SANT 70 113 IPR001005 -
Vra4g0717 308 PANTHER PROTEIN ODORANT1-LIKE 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0717 Vra-Chr4 13556170 13559266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0717 1 302 MYB Transcription Factor Family AT3G61250 64.706 8.72e-128 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra4g0717 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0717 K09422 - gmx:100800408 543.502