Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0714 ATGAACAATAGAGATAGAGAGAGGTACCCACCTGGGATGGGGTTAGGAAGAGGGTTGAACTCGAACCCTGGGTTTCAACCGAGGCCACATCAGCAACATCAATATGTGCAGAGGCACATGGTGCAGCACCATCATCCGCAGCAGTATCAACAGAACCACCACCACCATCAGCAACAGCAACAACATCATCAACACCATCAACATCAGCAGCAGCAACAACAACAGCAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACACCAACGTTGTGGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAACATCCCTGCACCTGATACACGCTACAAGACAGAGGATGTGACAGCAACTAAAGGCAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAGAGGCCATCTCCTATTCAAGAAGAAAGCATTCCCATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCAGCATTGGAAAAAATTGACCAGGATAATAATGTTATTCAAGTTGTAATATTGGTCCCAACTCGAGAGCTGGCTTTGCAAACATCCCAAGTGTGTAAAGAACTTGGAAAACATTTGAAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCGGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAACAGCTGATTCAATTTCTTCCTGGAACCCGTCAAATTCTAATGTTTTCTGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTACGTAAGCCATACGTTATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTATGCATTTGTTGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCTGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCGTGTTTCTATATCCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTCTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACCTACCTACACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCAGTGAATTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCACACATTGATCAAGCAATATATTGCCGGTGA 1533 0.4168 MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQQHQYVQRHMVQHHHPQQYQQNHHHHQQQQQHHQHHQHQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDSSSQDWKARLNIPAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGTRQILMFSATFPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0714 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 8 510 - -
Vra4g0714 510 CDD DEADc_DDX6 138 338 - -
Vra4g0714 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 8 510 - -
Vra4g0714 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Vra4g0714 510 Pfam DEAD/DEAH box helicase 161 325 IPR011545 GO:0003676|GO:0005524
Vra4g0714 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 507 IPR001650 -
Vra4g0714 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 283 291 IPR000629 -
Vra4g0714 510 MobiDBLite consensus disorder prediction 64 78 - -
Vra4g0714 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 337 IPR014001 -
Vra4g0714 510 CDD SF2_C_DEAD 348 477 - -
Vra4g0714 510 SMART helicmild6 387 468 IPR001650 -
Vra4g0714 510 MobiDBLite consensus disorder prediction 1 78 - -
Vra4g0714 510 MobiDBLite consensus disorder prediction 48 63 - -
Vra4g0714 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 490 IPR027417 -
Vra4g0714 510 MobiDBLite consensus disorder prediction 24 47 - -
Vra4g0714 510 SMART ultradead3 155 351 IPR014001 -
Vra4g0714 510 Pfam Helicase conserved C-terminal domain 362 468 IPR001650 -
Vra4g0714 510 Gene3D - 89 340 IPR027417 -
Vra4g0714 510 Gene3D - 341 510 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0714 Vra-Chr4 13510671 13516954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0714 136 507 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 8.18e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0714 K12614 - gmx:100788032 878.626