Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0700 ATGGCAACTGATATGCAAAGGCTTGTGGGAACGAGTGAGGATGATGAAGAAATGGGAATGGATGTGAAGGATGAGGATGATGATGAAGATGATTACGAGGAAAATGGAGGCGAGCAGAGAAATGCTTCAGGGATGGTGGGAATTGATGGTGGGAATGAGATAGGAACTGCCACTGGTGACAACAGATTTTCACAGCACCAGCAGTTTCATGAACAAGTAGGTACCCCTGGTGGAGGTACTCGAAGATCTAGGCCGGTAGAGGAGAAAGAGAGAACAAAGCTAAGAGAGAGGCGCCGGAGGGCCATCACTGCAAGGATCTTGGCTGGGCTTCGCAGGCATGGCAACTACAATCTAAGAGTTAGGGCTGACATAAATGATGTCATTGCTGCTCTAGCAAGGGAGGCTGGATGGGTGGTTCTTCCTGATGGTACTACTTTTCCCTCAAGATCTCAGGTAATTATCTTGCAAGATGGTCAAAAGCCAGCTGGTGGTAATTCTACAATCCTCACTTCATCATCTCCCCATGTGGCTTCGCAACAAACTCCATCCCCTTCTCTCAGGGGAGTTGCTTCTGGCTATCGGAGCCCTTTAGAGTATAGTGCATGTCAAACAAAAGGTGTTTTTATGCCAACTCCATCTCCTTATGATCTATCCTCAACTTCCCGATCTCAAACATCTATTGTAGGGGATGGAGAAGCACAAAGAGACAACCATCCTCTGATTGGTGGTTCAATCGATAATGCTGATGAGAAACAGATTGCTGACTTGCCTGCTAGATTACCCGAGCGAGATTTGGCTGGTACCCCATATGTTCCAGTTTATGTGATGCTTCCGTTAGGGGTGATCAATATAAAATGTGAGCTTGTTGATCCTGATGGTTTGCTAAAGCAGTTGAGGGTGTTGAAATCAGAGCATGTTGACGGTGTTATGGTAGATTGTTGGTGGGGAATCGTGGAGGCCCATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCGAGAAGTTAAGCTTAAGCTACAGGTTGTTATGTCATTTCATGAATGTGGAGGGAATTTTGGTGATGATGTTTGTATTCCATTGCCGCATTGGGTTGCTGAAATTGGTAGGAGCAATCCTGACATTTTTTTCACTGATAGAGAGGGAAGGCATAACCCTGAATGTCTTTCTTGGGGAATAGATAAGGAACGAGTTTTAAGAGGTCGTACTGCTGTGGAGGTTTACTTTGATTTCATGAGAAGTTTCCGGGTAGAGTTTGATGAGTATTTTGAGGATGGCTTAATCTCCATGATTGAAGTTGGACTCGGTCCATGTGGAGAGCTAAGATATCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGTTATGATCATTATATGTTGAAAAGTCTTAGGAAAGCTGCAGAAGCAAGAGGTCACGCTATTTGGGCTAGAGGACCAGATAATGCTGGTACCTATAATTCTCAGCCACATGAAACAGGTTTCTTTTGTGATGGGGGTGATTATGATGGCTTCTATGGCAGGTTTTTTCTTAGCTGGTACTCTCAGGTTTTAGTTGATCATGGAAACCGGGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCTTGTGTTACTGCAAAGTTATCAGGTATTTACTGGTGGTACAAGACTGCAAGTCATGCAGCTGAGTTAACTGCTGGGTACTATAACCCATGCAATCGTGATGGCTATGCTGCAATTATGACAATGTTAAAGATAAATGGAGTTAGCTTAAACATTCCTTGTGTTGAGTTGCACACATTAAACCAACATGAGGGTTTTCCAGAGACATTTGCAGATCCTGAGGGATTAGTCTGGCAAGTGTTGAATGCCGGTTGGGATGTTGACCTACCAGTTACTAGTCAGAATGGATTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGATCATGCCAAGCCCATGAATGATCCAGATGGAAGGCACTTTTCATCGTTTACTTACCTGAGGCTTAGTCCACTTCTTATGGAACGACAAAACTTCATAGAGTTTGAACGATTTGTCAAAAGGATGCATGGGGAAGCTGTTCTTGATCTTCAGGTATAA 2127 0.4368 MATDMQRLVGTSEDDEEMGMDVKDEDDDEDDYEENGGEQRNASGMVGIDGGNEIGTATGDNRFSQHQQFHEQVGTPGGGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQVIILQDGQKPAGGNSTILTSSSPHVASQQTPSPSLRGVASGYRSPLEYSACQTKGVFMPTPSPYDLSSTSRSQTSIVGDGEAQRDNHPLIGGSIDNADEKQIADLPARLPERDLAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLRVLKSEHVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVREVKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRVEFDEYFEDGLISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDHYMLKSLRKAAEARGHAIWARGPDNAGTYNSQPHETGFFCDGGDYDGFYGRFFLSWYSQVLVDHGNRVLSLAKLAFEGSCVTAKLSGIYWWYKTASHAAELTAGYYNPCNRDGYAAIMTMLKINGVSLNIPCVELHTLNQHEGFPETFADPEGLVWQVLNAGWDVDLPVTSQNGFPCLNRVSYNKVLDHAKPMNDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0700 708 Pfam BES1/BZR1 plant transcription factor, N-terminal 79 221 IPR008540 -
Vra4g0700 708 MobiDBLite consensus disorder prediction 1 94 - -
Vra4g0700 708 PRINTS Plant beta-amylase signature 431 440 IPR001371 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Plant beta-amylase signature 674 688 IPR001371 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Plant beta-amylase signature 689 703 IPR001371 GO:0000272|GO:0016161
Vra4g0700 708 PANTHER - 76 708 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 Pfam Glycosyl hydrolase family 14 274 693 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 MobiDBLite consensus disorder prediction 214 245 - -
Vra4g0700 708 SUPERFAMILY (Trans)glycosidases 267 704 IPR017853 -
Vra4g0700 708 MobiDBLite consensus disorder prediction 57 74 - -
Vra4g0700 708 Gene3D Glycosidases 262 707 - -
Vra4g0700 708 MobiDBLite consensus disorder prediction 17 35 - -
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 305 319 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 326 344 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 348 369 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 441 463 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 514 533 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 548 564 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 565 576 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 583 606 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 623 645 IPR001554 GO:0000272|GO:0016161
Vra4g0700 708 PANTHER BETA-AMYLASE 76 708 - -
Vra4g0700 708 MobiDBLite consensus disorder prediction 214 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0700 Vra-Chr4 13276975 13283122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0700 1 705 Glycoside Hydrolase AT2G45880 65.162 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vra4g0700 Glyco_hydro_14 6.3e-102 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0700 K01177 - gmx:100805560 1285.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0700 4 13276975 13283122 Vra4g0700 4 13276975 13283122 ECH