Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0676 ATGGCAGATCCTGCTAGTTATGGGAGTCTTGAACGTGATATTGAACAAACACTCACTGCTTTAAAGAAAGGAACTCAATTGATAAAGTACAGTCGAAAAACGAAGCCGAAAGTTCGTTCATTCAAACTTTCTCTGGATGAGAAAACGTTGATTTGGATTTCTCATAAGAAGGAAAGGCATTTGAAATTATCTTCAGTTTCACATATTATCTCTGGACAAAGAACTGCTGTTTTTAGAAGATATTTGCAACCAGAAAAGAATTATCTTTCATTTTCTCTTGTTTATAATAATGGGGAGCGAACACTTGATTTGATATGCAAGGACAAAGATGAGACAGAGACATGGTTTAGAGGCCTTAATACATTAATTTCTTCGGAAAAGTTAAATACGAGCATTGTAAGGGAATTTTTTTACGATGGTGTTAATGTCATCCCAAATGGTCATCGTTTTGCTGCAACACTACAATATGCTATAAGCTTTGCTGGTAAAAAGGTCCCTTTTGGTTTTGATAGTCATGAGTCTTCATTGAATTTGGTAAGTACAGATGTGGGGTTAGAGCGTGCTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTATCAGTGTGTCAAGTACACCTAGTGTTTCAAGTTCAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGATTTCACATGATGTTTTTGTTACTCAACCCCCTGCTACAACAGATGTATTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCTGGAATGCGACACATTGCTTTAGTAACAAGACAAGGAGAGGTTTTTACATGGGGAGAAGAATCTGGGGGGAGACTTGGTCATGGAATTGATAAAGATTTTAGTCGTCCTCATCTTGTTGAGTTTTTGGCAGTTACCAACATGGATTTTGTTGCTTGTGGAGAGAATCATACATGCGCCGTGTCTACTTCTGATGATCTTTTCTCATGGGGTGATGGTACTTATAATGTTGGACTTCTTGGACATGGAACTGATGTCAGCCATTGGATACCAAAGAAGGTTAGTGGTCCTCTGGAAGGGCTTCAAGTTATATCTATATCATGTGGCACATGGCATTCAGCATTAGCAACTTCTAATGGAAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTATTGGGTCATGGAAATAGACAAAGTGTATCATATCCAAAAGAGGTGCAATTGCTAAGTGGATTGAAAACTATCAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAATCTGGTTCAAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATACCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACTTGTGTCTCTACACTTATTGAATACAACTTTCATCAAATAGCTTGTGGGCACACTATGACTGTTGCCCTCACTACATCTGGTCATGTCTTCACCATGGGAAACACTGAAAATGGTCAATTGGGAAATCCTTTAGCTGATGGAAAAGTACCTATCCTAGTACAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAATATCATGTGGGTCACATCATGTTGCAGCCTTAACATCAAGAAGTGAACTGTATACATGGGGTAAAGGTGCTAATGGAAGACTAGGACATGGAGACATAGAAGATAGAAAGTCTCCAACATTGGTGGAATCCTTGAGAGATAGACATGTGAAGAATATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTGTCTGGAGTTGACCAATCTATTTGCACTGGTTGTAGACAACCATTTGGATTCACTAGAAAGAGACATAATTGTTATAATTGTGGATTAGTGCATTGTCATGGCTGCAGTTCAAGAAAAGTACTAAAAGCAGCCTTGGCTCCAACACCAGGAAAACCACATCGTGTGTGTGACTCTTGTTATAATAAACTCAAAGCTGTTGAAGCATCTGCTACTGCAAATCTCAATAGAAAAATTACTGCTACTACTTCTGCACCTCGCTCTTCCATGGATTCCAGGGAAAGATTTGGCACTGGAGAAATTAAGTCTTCAAGACTCATTTTGCCTCCAATCACAGAACCAGTAAAATATCATCAAATATTGACTAATAAGCTGGGAACCAATTATCCTTCCATGTCTCCATCTTCCCAAATTCCAACACTTCTACAATTGAATGAGATTACATTTTCAAATTCAATGAATTCCTCTCAAAACGTTATGAAGTCTGCTTTATCTCCTAATCCGCCACCAATTTCACCTGCAAGACCATCGTCTCCTCATACAAGAAGGTCAAGCTCACCACGTTCTCGAACAGGATTTTCTAGAAGTCTCATTGAAAGTTTGAACAAGTCAAATGAACTTCTAAATCAACAAGTTTCAACGCTGCAAAACCAGTTACGAAGTTTGAAGCAAAAACAAGTCATGGAAATTGCAAAGCTTCAGAAAAATGTTAGGGAAGCTACTTCCTTAACCCTAGAGGAATCTTCTAAACATAAAACTACGAAAGAGTTTTTTAAGTCTACTGTAGATCAGTTGAAGGAAATGGTGGAGAAGTTGCCACCAGAAGCTTCAGATAGTGAAAATTGGAAAACCATACTTACTGGAGCTGAAGATTTTCTGAGAGTTAATTCAGAATCTGAAATGCCCTCCATATCCCCAAGTGACAATTCTCTACAACAAAATGCTCCTAATAAACTTGACTCAAATGATAGTTCTTCTAAATTGCAAGACGAAAATAGTGAAACTGAAGGAGTTGAATCGTCATCACGAGATGAAGGAAATGTTCTTCAAGAAAGTAATAACTCATATTTATCAAATAATGAAGCATCAATGTCTTTACAAAACTCTCTAAGAGAACCTTCAAGATCAATGAGAGAAGGAGAAACACAAGTCATTGAACAGTTTGAACCTGGTGTATATGTAACATTAATAGTAAAGCCTAATGGTATCAGGACTTTCAAACGAGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAATAAAAACAAAGATAGGGTGCTTAGGAAATATAGTACTTTAGCAGCTACAAAAGCTGATGGTTCTGCGTCATCTAACACGCTACCACCACCTGCAGAAGAAAATATGGAGGCAATGTCTTCTTGA 3228 0.3817 MADPASYGSLERDIEQTLTALKKGTQLIKYSRKTKPKVRSFKLSLDEKTLIWISHKKERHLKLSSVSHIISGQRTAVFRRYLQPEKNYLSFSLVYNNGERTLDLICKDKDETETWFRGLNTLISSEKLNTSIVREFFYDGVNVIPNGHRFAATLQYAISFAGKKVPFGFDSHESSLNLVSTDVGLERANMQPRTSIGDGFRISVSSTPSVSSSGSGPDDIESLGDVYVWGEVWADGISHDVFVTQPPATTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGIDKDFSRPHLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTDVSHWIPKKVSGPLEGLQVISISCGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVSYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPLADGKVPILVQDKLVGEFVEEISCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVESLRDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEASATANLNRKITATTSAPRSSMDSRERFGTGEIKSSRLILPPITEPVKYHQILTNKLGTNYPSMSPSSQIPTLLQLNEITFSNSMNSSQNVMKSALSPNPPPISPARPSSPHTRRSSSPRSRTGFSRSLIESLNKSNELLNQQVSTLQNQLRSLKQKQVMEIAKLQKNVREATSLTLEESSKHKTTKEFFKSTVDQLKEMVEKLPPEASDSENWKTILTGAEDFLRVNSESEMPSISPSDNSLQQNAPNKLDSNDSSSKLQDENSETEGVESSSRDEGNVLQESNNSYLSNNEASMSLQNSLREPSRSMREGETQVIEQFEPGVYVTLIVKPNGIRTFKRVRFSKRRFHEHQAEEWWNKNKDRVLRKYSTLAATKADGSASSNTLPPPAEENMEAMSS* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0676 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 907 932 - -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 786 803 - -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 1052 1075 - -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 764 803 - -
Vra4g0676 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Vra4g0676 1075 Pfam Transcription factor regulating root and shoot growth via Pin3 991 1045 IPR013591 -
Vra4g0676 1075 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Vra4g0676 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 680 IPR013083 -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 907 990 - -
Vra4g0676 1075 CDD PH_PLC_plant-like 12 124 - -
Vra4g0676 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Vra4g0676 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Vra4g0676 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 336 385 IPR000408 -
Vra4g0676 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Vra4g0676 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Vra4g0676 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 933 950 - -
Vra4g0676 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Vra4g0676 1075 CDD FYVE_like_SF 618 670 - -
Vra4g0676 1075 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Vra4g0676 1075 PRINTS Chromosome condensation regulator RCC1 signature 265 278 IPR000408 -
Vra4g0676 1075 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Vra4g0676 1075 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Vra4g0676 1075 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Vra4g0676 1075 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Vra4g0676 1075 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Vra4g0676 1075 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Vra4g0676 1075 SMART fyve_4 606 675 IPR000306 GO:0046872
Vra4g0676 1075 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1045 - -
Vra4g0676 1075 Pfam Transcription factor BRX N-terminal domain 855 890 IPR027988 -
Vra4g0676 1075 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Vra4g0676 1075 SUPERFAMILY PH domain-like 13 123 - -
Vra4g0676 1075 Coils Coil 807 834 - -
Vra4g0676 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Vra4g0676 1075 MobiDBLite consensus disorder prediction 951 982 - -
Vra4g0676 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Vra4g0676 1075 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1045 - -
Vra4g0676 1075 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Vra4g0676 1075 Gene3D - 12 130 IPR011993 -
Vra4g0676 1075 SUPERFAMILY FYVE/PHD zinc finger 608 679 IPR011011 -
Vra4g0676 1075 Gene3D - 448 620 IPR009091 -
Vra4g0676 1075 Gene3D - 203 447 IPR009091 -
Vra4g0676 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Vra4g0676 1075 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vra4g0676 1075 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 269 279 IPR000408 -
Vra4g0676 1075 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0676 Vra-Chr4 12584052 12590286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0676 988 1046 Major Intrinsic Protein MIP AT1G31880 37.288 1.32e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0676 - - gmx:100779684 1648.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0676 4 12584052 12590286 Vra9g1123 9 14857033 14875947 PCT