Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0672 ATGCAAACAAACGACATATTACACATATTATTTAATAGCTCAGCCAATTCTATAAAAGAGGAAAACTTGTCTAAGCAGACAGATGGAAAAGGAAGGGCAGAGAAAACAAACAAAGAGCGAGAAAAGCAAAATCAAAATCAAAACAACAACTGCACAAAAGTGATAAGCATGGCTTCTAGGGACAAAAGAAGAGAGTCTCTGGAACAGACTTTGCAACAGCTTCGCGATGTCACAAACTCCACTGCTCTGAACAAAGCTTCAATCATTGCAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAAGTGGAGGGTCTGAACTCAGAGCTGGGGATCACGGAATCATCATCAAACTCTCAAATTGATGAACTGCCTGCGGTAACTGTGAAAACCCTAAAGAAGGGTTTCCTCATTAACGTGCTTTTAGAGAAGAATAGTCCTGGTATGCTCGTGTCTGTACTCGAAGCCTTCGAAGAACTTGGCCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCTGTGGGAAGAGAAAGTGACAAGAACGACAGTGTTGACGCCCAAGTGGTAAAGCAAGCAGTGTTGCGAGCAATCAAGAAGGAGGACTAA 624 0.4215 MQTNDILHILFNSSANSIKEENLSKQTDGKGRAEKTNKEREKQNQNQNNNCTKVISMASRDKRRESLEQTLQQLRDVTNSTALNKASIIADASKYIEELKQKVEGLNSELGITESSSNSQIDELPAVTVKTLKKGFLINVLLEKNSPGMLVSVLEAFEELGLDVLDARVSCEDSFQLEAVGRESDKNDSVDAQVVKQAVLRAIKKED* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0672 207 Coils Coil 57 77 - -
Vra4g0672 207 Gene3D - 56 124 IPR036638 GO:0046983
Vra4g0672 207 MobiDBLite consensus disorder prediction 23 42 - -
Vra4g0672 207 ProSiteProfiles ACT domain profile. 138 207 IPR002912 -
Vra4g0672 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 113 IPR036638 GO:0046983
Vra4g0672 207 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 57 205 - -
Vra4g0672 207 Coils Coil 30 50 - -
Vra4g0672 207 Coils Coil 89 116 - -
Vra4g0672 207 MobiDBLite consensus disorder prediction 20 50 - -
Vra4g0672 207 CDD ACT_UUR-ACR-like 144 203 - -
Vra4g0672 207 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 57 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0672 Vra-Chr4 12465162 12466787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0672 7 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 26.437 1.02e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0672 - - vra:106759069 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0672 4 12465162 12466787 Vra6g0539 6 4702072 4703712 ECH
Vra4g0672 4 12465162 12466787 Vra4g0672 4 12465162 12466787 ECH
Vra4g0672 4 12465162 12466787 Vra6g0861 6 8827669 8828948 ECH