Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0666 ATGAACATTTCAAATATCACAGTTCGTTTTTTCTCACTCTTTTCCCTTATAGGGATAGTCTCAGCCCAGTTATCAGCTACCTTTTACGGAAAAACATGTCCTAATGCACTTTCAACCATTAAAACAGAAGTAGTGTCTGCTGTTAACAACGATCGTCGCATGGGGGCTTCCTTGCTTCGTCTTCATTTCCATGATTGCTTTGTTCAAGGATGTGATGCATCAGTACTATTGGATGATACATCAAGTTTCACAGGTGAGAAAACAGCGGGTCCCAACGCTAATTCCCTGAGAGGGTTTGATGTAATAGATACCATAAAGTCTAAGGTGGAGAGCTTATGTCCTGGTGTTGTTTCTTGTGCTGATATACTTACTGTAGCAGCAAGAGACTCAGTAGTTGCACTTGGTGGAGCTAGTTGGACTGTGCCACTGGGTAGAAGAGACTCAACCACTGCAAGTTTAAGTTCTGCTAACTCAGACTTGCCTGGTCCCACTTCAAGCTTAAGTGCTCTCATCTCTTCTTTCTCCAACAAAGGTTTTACAGCTAAAGAACTGGTTGCTCTTTCAGGATCGCACACAATTGGGCAAGCCAGGTGCACAACTTTCAGAAGAAGGATATACAACGACACGAACATAGATTCTTCTTTTGCAACATCATTGCAAGCAAACTGCCCTAGCGTAGGTGGTGACAGCACGTTGTCCCCTCTTGACACGAGCAGCCCAAACACCTTTGACAATGCATACTTCAAGAATTTGCAGAGCAAGAAGGGTCTTCTGCACTCAGACCAAGAGCTTTTCAATGGCGGATCCACTGACTCTCAAGTAAATGCTTATAGCAGCAACCCTGCAAGTTTCAAAACTGACTTTGCCAATGCAATGGTTAAAATGGGGAACCTTAGTCCACTCACTGGCTCTAGTGGCCAGATCAGAACCAACTGTAGGAAGACCAACTAA 951 0.4395 MNISNITVRFFSLFSLIGIVSAQLSATFYGKTCPNALSTIKTEVVSAVNNDRRMGASLLRLHFHDCFVQGCDASVLLDDTSSFTGEKTAGPNANSLRGFDVIDTIKSKVESLCPGVVSCADILTVAARDSVVALGGASWTVPLGRRDSTTASLSSANSDLPGPTSSLSALISSFSNKGFTAKELVALSGSHTIGQARCTTFRRRIYNDTNIDSSFATSLQANCPSVGGDSTLSPLDTSSPNTFDNAYFKNLQSKKGLLHSDQELFNGGSTDSQVNAYSSNPASFKTDFANAMVKMGNLSPLTGSSGQIRTNCRKTN* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0666 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Vra4g0666 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 Gene3D - 27 313 - -
Vra4g0666 316 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Vra4g0666 316 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 ProSiteProfiles Plant heme peroxidase family profile. 23 316 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601|GO:0042744
Vra4g0666 316 Gene3D Peroxidase, domain 2 161 295 - -
Vra4g0666 316 PANTHER PEROXIDASE 72-RELATED 16 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra4g0666 316 PANTHER PEROXIDASE 16 316 - -
Vra4g0666 316 Pfam Peroxidase 41 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0666 Vra-Chr4 12364526 12367311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0666 19 316 Peroxidase AT5G05340 65.667 1.53e-146 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0666 K00430 - gmx:100815142 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0666 4 12364526 12367311 Vra4g0666 4 12364526 12367311 ECH
Vra4g0666 4 12364526 12367311 Vra6g0853 6 8720218 8723241 ECH