Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0659 ATGCAAAAAGAGCTGCAGAAAATGGAACAGAAGGGAGGTGTGCTTCTGCAAAAATATGAACTTGGTAGGTTATTAGGCCAAGGGACATTCGCAAAGGTCTACCATGGTAGGAATCTGATAACTGGCATGAATGTGGCCATTAAGGTAATTGATAAGGAAAAAATTTTGAAAGTTGGATTGGTTGATCAGATTAAGCGTGAAGTTGCAGTGATGAGATTGATCAGACATCGACATGTGGTTGAGCTTTATGAGGTAATGGCCACCAAAACCAAAATTTTCTTTGTCATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGGTAATCAAAGGAAGGCTGAAGGTGGATACTGCTAGGAAATATTTTCAGCAACTGATCAGCGCTGTTGACTACTGCCATAGCAGGGGTGTTTGTCATCGAGACTTAAAGCCTGAAAATCTACTTTTGGATGAAAATGATAATTTGATGGTTTCAGACTTTGGGTTGAGTGCCCTTACTGAATCCAAACGGCAAGATGGGTTGCTCCATACTACATGTGGAACCCCTGCTTATGTTGCTCCAGAAGTGATAAGCAGAAAGGGTTACGATGGGATGAAAGCAGATATATGGTCATGTGGGGTAATCTTGTTTGTTCTGTTGGCTGGTCATCTTCCATTCCATGATTCAAATCTGATGGAGATGTACAGGAAAATCAGTAAAGGAGTATTCAAATTTCCTAAATGGTTTGCACCAGATGTTCGCCGATTATTATCCAGAGTATTGGATACAAACCCAAAGACCAGGATATCAATTGCCGGAATTATGAAATGTTCTTGGTTTAAAGTGAGGTTGGAGAATCCTGCTATTACTGCAACTGAAAACCAAGAACCAGCTCCAGCTCCAGCTCCCCTGAATGCTGATGGAATAGTTGAAGCGTGTGAGTGCGAGAATGACGGTCCACCTATTGCAGTTGCAAAGCATGAACTGACCAAGCCTTGTAACTTGAATGCTTTTGCTATTATCTCCTTCTCAACTGGTTTTGATTTATCTGGTATGTTTGAGGACAGTGTTCCAATGAAAGAGATGCGGTTCATGTCAAATAAGCCTGCTTCGAGTATAATCTCAAAGTTGGAAGAAATTTGTAAGAGGGTTTGCTTGAAAGTAAGGAAGAAAGATGGAGGGTTGTTGAAGTTGGAAGGTTCTAAAGAAGGGAGAAAAGGGAGTTTAGGTGTTGATGCTGAGATTTTTGAGATTACTCCTCAGCTCCACATGGTGGAACTTCGAAAGTGCAATGGTGATACCATGGAGTATCAGAAGCTTTTTACACAGGATATCAGACCAGCACTTGAAGACATTGTTTGGACATGGCAAGGAGAACAACCACAGCAAGAGCAACACCATCATGAAGAACACCAACCTTCTCATACCGCTTAG 1413 0.4168 MQKELQKMEQKGGVLLQKYELGRLLGQGTFAKVYHGRNLITGMNVAIKVIDKEKILKVGLVDQIKREVAVMRLIRHRHVVELYEVMATKTKIFFVMEHAKGGELFNKVIKGRLKVDTARKYFQQLISAVDYCHSRGVCHRDLKPENLLLDENDNLMVSDFGLSALTESKRQDGLLHTTCGTPAYVAPEVISRKGYDGMKADIWSCGVILFVLLAGHLPFHDSNLMEMYRKISKGVFKFPKWFAPDVRRLLSRVLDTNPKTRISIAGIMKCSWFKVRLENPAITATENQEPAPAPAPLNADGIVEACECENDGPPIAVAKHELTKPCNLNAFAIISFSTGFDLSGMFEDSVPMKEMRFMSNKPASSIISKLEEICKRVCLKVRKKDGGLLKLEGSKEGRKGSLGVDAEIFEITPQLHMVELRKCNGDTMEYQKLFTQDIRPALEDIVWTWQGEQPQQEQHHHEEHQPSHTA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0659 470 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 9 459 - -
Vra4g0659 470 Gene3D Transferase(Phosphotransferase) domain 1 10 305 - -
Vra4g0659 470 CDD STKc_SnRK3 18 272 - -
Vra4g0659 470 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Vra4g0659 470 Gene3D Kinase associated domain 1, KA1 323 448 - -
Vra4g0659 470 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0659 470 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vra4g0659 470 MobiDBLite consensus disorder prediction 455 470 - -
Vra4g0659 470 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0659 470 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0659 470 CDD CIPK_C 329 442 - -
Vra4g0659 470 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Vra4g0659 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vra4g0659 470 MobiDBLite consensus disorder prediction 451 470 - -
Vra4g0659 470 PANTHER - 9 459 - -
Vra4g0659 470 Pfam NAF domain 325 383 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0659 Vra-Chr4 12259117 12262920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0659 8 455 CBL-interacting serine-threonine protein kinases AT5G58380 62.555 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra4g0659 Pkinase 3.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0659 K07198 - gmx:100811923 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0659 4 12259117 12262920 Vra4g0659 4 12259117 12262920 ECH
Vra4g0659 4 12259117 12262920 Vra6g0847 6 8645221 8647779 ECH
Vra4g0659 4 12259117 12262920 Vra10g0449 10 10207009 10209337 ECH