Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0654 ATGAGAGAACCGCACAACATAACAACCACCAACGACGACGTCCCGTCTGGCGTCGTTTTGTTCGGGAAGTACGAGTTGAAGAGGTTACTGGGAGTCGGCGCGTTTGGCAAGGTGTACCACGCCACCACTGCCGGCACGCGCCAGAGCGTGGCGGTGAAGGCCGTCAGCAAAAGCAAGGTCTTAAACGGAGGTTTTGCTGCCAACGTCGAACGTGAGATCTCTATCATGCGCCGCCTCCACCACTCCAACATCATTGACCTCTTCGAAGTACTCGCAACGAAGACCAAAATCTACTTCGTCATGGAGTTTGCCGCCGGCGGCGAGCTCTTCCACGCGGTAGCCAGAAAGGGGCGCCTCGAGGAGGACGCCGCCAGGTTTTACTTCCGGCAACTCATCTCCGCCTTGAAACACTGTCACTCGCTCGGCGTGTTCCACCGCGACCTCAAGCTCGATAATCTGCTGCTCGACGAGAACGGGAATTTGAAAGTCTCCGATTTTGGGTTGAGTGCGGTCACGGGTCAGATCCGACCCGACGGGTTGTTACACACTATTTGTGGAACCCCTACCTATGTGGCACCCGAGATTCTGTTGAAGAGAGGCTATGATGGTGCGAAAGTGGATCTGTGGTCGTGCGGCGTCGTTTTGTTTGCGCTCACTGCAGGTTATTTACCATTCAATGATTGCAACGTCACCGTTTTATTCAGAAAGATTTACCGCGGTCAATTCCGGTTCCCTAGGTGGATGTCCAGTGATCTGAGGTACCTCTTATCACGCTTGCTTGACACAAATCCCGAAACCAGGATTACCATTGATGAAATCTATCAAGACACGTGGTTCAACGCGGGTGAGGACCAGTACGAACCGGTTCGGGTCAAGGAGAGTGAATGCGTATGCGGGGAGAGCCGAACCGGGTTCAAGTCGCTGAACGCGTTCGACTTAATTTCTTTTTCGACAGGTTTGGACATGTCGGGTCTTTTCGAGGACCCGAACGGGTCGGATTCGGTGGAACGGGTTGTTTCTGCCGTGGAGCCGGAGAATATTATAGAGAGAGTAGAGGCGACAGCGGAGGAGGAGAAGGTGGTACTAAAGAGGGAGAGAAACGGTGGTGGAGCGAAGTTGGAAGGGCAGGACGGTAATTTGATAGGTCTCGTAGTAGTTTACCGGTTAACGGAAGAGCTTGTAGTGGTTGAAATGAAGAGAAGTGAGAAGGGAGGGGAATCTGGCGCGAAGTTTTGGAAAGATAAACTGCGCCCTCTGCTTATTGAATTGGCAGGTGAGCGGGAAACGCCGGTTTCCGGTGACTTTTGTAACATATAG 1317 0.5285 MREPHNITTTNDDVPSGVVLFGKYELKRLLGVGAFGKVYHATTAGTRQSVAVKAVSKSKVLNGGFAANVEREISIMRRLHHSNIIDLFEVLATKTKIYFVMEFAAGGELFHAVARKGRLEEDAARFYFRQLISALKHCHSLGVFHRDLKLDNLLLDENGNLKVSDFGLSAVTGQIRPDGLLHTICGTPTYVAPEILLKRGYDGAKVDLWSCGVVLFALTAGYLPFNDCNVTVLFRKIYRGQFRFPRWMSSDLRYLLSRLLDTNPETRITIDEIYQDTWFNAGEDQYEPVRVKESECVCGESRTGFKSLNAFDLISFSTGLDMSGLFEDPNGSDSVERVVSAVEPENIIERVEATAEEEKVVLKRERNGGGAKLEGQDGNLIGLVVVYRLTEELVVVEMKRSEKGGESGAKFWKDKLRPLLIELAGERETPVSGDFCNI* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0654 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vra4g0654 438 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0654 438 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165
Vra4g0654 438 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0654 438 SUPERFAMILY Protein kinase-like (PK-like) 20 288 IPR011009 -
Vra4g0654 438 Pfam NAF domain 306 360 IPR004041 GO:0007165
Vra4g0654 438 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0654 438 Gene3D Transferase(Phosphotransferase) domain 1 18 307 - -
Vra4g0654 438 CDD CIPK_C 309 420 - -
Vra4g0654 438 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Vra4g0654 438 PANTHER - 8 432 - -
Vra4g0654 438 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 8 432 - -
Vra4g0654 438 Gene3D Kinase associated domain 1, KA1 308 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0654 Vra-Chr4 12140424 12142359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0654 19 426 CBL-interacting serine-threonine protein kinases AT2G30360 56.325 1.21e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra4g0654 Pkinase 1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0654 - K12761 gmx:100788245 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0654 4 12140424 12142359 Vra4g0654 4 12140424 12142359 ECH