Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0651 ATGGTTGTCTTGCAAAGCTTTGATCGTGGGGTCATCCAAGGATGGTGGGATGATATCCAAAAGAGATATCCTGAAACCTATGAAGTTTTCAAACACTGTGTATTAGTTCCACACTTTCTGCTCCAAAACCAGATTTCAGACTGGTGCAAGTTAAATGGCGTTGACCTTCCAACGACTCATGAAGAAGAACTTACGAAGGAAACTAGAAACAGTATCATTGCTCTTCTAATGAAGTTGTCACTGTCAACGCCAGAACAGAAAGGAGCTTTAAAGGAGCTATGTCAATTAGCTCAAAGAAGTTCAGGCGTTCGAACCCTCTTTGGTAAGATACAGATGATTGAGAATTTGATGCATCCGTTGTCATCCGTATCTCTTGCTGATACTGAATTCCGAAATGATTTACTACTGCTGTTACAACATTTATCTGTACTCGACAAGAACAAAATTTTTTTGGGGGAAAACGAAAAGATAATGGTTTTCTTAGTTGATTCGTTGAAATCATGCAGTGCTCAAGTCAGGATTAAAGCGGCAGGAACCTTGGCTTCGTTCGCGTGTTTAGATTCAAATAAACACATAATTGGAAACAGTGGAGCCATCAAATTTTTGGTAAGTTTACTTAAAGAGGAAGACCAATTAGGTCTTAAAACTGCTGGATCAGCCATATACAAATTATGTTTTTTACATGAAAACATAGTTAGGACGGTGCAAGAAGGAGCTGTGGAGATTATTCTTGATTTGTCTGCTATTGGCTTCTCTTTTCCCACCAGAGCAACACTTCAAGAGCTGAAGTATGGATCAGTAACATCAATAGATGAGGAACTGGTTGAAAGTGATGGAAATGAACTGCAAAATGTTAGAAAAGCAGAAGGAGTGTATGTAGTTAGCTCTGAGGATGGAAGTAGCCACATGGTGGCTGTTACAGCAAGTTTCTTCGAGAGTGGGTATGAAGATGGACTGAGACTTTTTGGAAAACATATGGTTGCACTTTATGACTTCAGGGAATAG 1005 0.394 MVVLQSFDRGVIQGWWDDIQKRYPETYEVFKHCVLVPHFLLQNQISDWCKLNGVDLPTTHEEELTKETRNSIIALLMKLSLSTPEQKGALKELCQLAQRSSGVRTLFGKIQMIENLMHPLSSVSLADTEFRNDLLLLLQHLSVLDKNKIFLGENEKIMVFLVDSLKSCSAQVRIKAAGTLASFACLDSNKHIIGNSGAIKFLVSLLKEEDQLGLKTAGSAIYKLCFLHENIVRTVQEGAVEIILDLSAIGFSFPTRATLQELKYGSVTSIDEELVESDGNELQNVRKAEGVYVVSSEDGSSHMVAVTASFFESGYEDGLRLFGKHMVALYDFRE* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0651 334 PANTHER U BOX DOMAIN-CONTAINING 3 245 - -
Vra4g0651 334 SUPERFAMILY ARM repeat 76 247 IPR016024 -
Vra4g0651 334 Gene3D - 58 261 IPR011989 -
Vra4g0651 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 55 IPR013083 -
Vra4g0651 334 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 46-RELATED 3 245 - -
Vra4g0651 334 SUPERFAMILY RING/U-box 5 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0651 Vra-Chr4 12074930 12078091 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0651 5 240 U-box Gene Family AT5G18320 32.922 5.46e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0651 - - vra:106758363 652.129