Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0649 ATGGAATTTCCTGATACTGTCAATACAGCCATGTACAAGGGGAGATTCTGCACTAGTGGTGGAGTTAAGTCTCAGCTGGGATATGTTGAAACTGATCCATCTGGTCGATATGGTCGTTTCAGGGATGTTCTAGGCAAAGGAGCAATGAAGACTGTGTATAGGGCATTTGATGAGTTACTTGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTGTTTCACTCACCTGAACAACTTCAGCGCCTTTATTCAGAGGTTCATCTGCTGAAGCACCTCAACCATGACTCTATGATGATCTTCTATGGTTCTTGGATCGATGTCAACAACAGAACCTTCAACTTTATCACTGAATTGTTCACCTCCGGTACACTTAGAGAGTACAGGCAAAAGTATAAGCGAGTAGATATCCGAGCAGTTAAGATTTGGGCTCGCCAGATTCTTAGTGGCTTGGAGTATTTACACAGCCATAATCCTCCTGTAATACATAGAGATCTCAAGTGTGACAACATCTTTGTCAATGGCCATCAGGGGAGGGTCAAGATTGGTGACTTAGGCCTAGCAGCTATACTTCGTAGTTCTCAACATGCCCACAGTGTCATAGGCACACCAGAATTCATGGCACCAGAACTGTATGACGAGAAATATAACGAGCTGGTAGACATATATTCCTTTGGTATGTGCATGATAGAGTTGCTTACTTTTGAGTTCCCATACAGTGAATGCGCCAACCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCTAATGCGTTTTACAGAATCCCAGATTTGGAAGCCCGGAAGTTTGTCGGAAGATGTTTGTCAAATGTCTCAGATAGACCATCAGCAACGGAGCTCTTGTTGGACCCTTTTTTAGCTGTGGACCAACTTGAAATACCATTGCCACCAAACATACCATTATTTCCAAATCACACTCTACAGCTTAATTCCGCTCCACTAGTTCCCATTGAGCATCATCATGATCAAACAAAGAGTGCAGAAATGACAATTACTGGTTCAATAAACGAAGAGGACAACACAGTTTTCCTCAAAGTGAGGATCTCTGACATAACAGGGCACACGAGACATGTGTTCTTCCCATTTGATACATTAAAAGACACGGCTATTCAGGTGGCGATGGAGATGGTGCAAGAACTTGAGATTAGCCACTTGGAACCATTAGAGATTGCTGCAATGATAGATCATGAGGTATCAGCTTTAGTTCCAAGTTGGAGGGACAGGGTTAAGTGTCACCACCAACGACAACACAGCTTTAACTACGAAGAAGATGAAGATGTCAATAACCACCACCCCTTCTTCTTATCATCTTCTCCATCATCGCCTCGTGGTTCTGGCCACATGTCTGCTTCCAACTCCTTCAAAACCCTTGTTCGCGGCCACCATTACCCTTTTGCTCAAGAAGGGTCTCAAGATGACGTGTTCATGAACAACGACGACGCAAGCTCTCAAGCCTCGATGAACTCCTTCAAGTGTTCAACCTTCCAATTCTGCGACCCGTGCCACGAAGACGAGCACGACGGAACCGAACGCAACAAGTGCACCACATTATCGTGCCGTGGCGGCGAAGAAGGCGAACCCCGTTTGGCGAACCCGGTTTTGAACCCGCCGAGGATGGAGTGTTCGTGCGGGTGCAGGTTTGGGTCGGGTCACGGGTGCCCGAGGCTGACTCGGATCCGGTCGTGCCCGCACGAGCGGCGGAGCCTGCAGCTCCAACGGTCGATGATGTTGGAGGAGATTTACAAGTACAAAAGACGCTTCTTCAACACCATTGGTGCCGTTGAGAACATCGGGTTTGGGCATCCACTAAGAGGCGGTGTGTGCTTTCCTCGTGTGTAG 1869 0.4687 MEFPDTVNTAMYKGRFCTSGGVKSQLGYVETDPSGRYGRFRDVLGKGAMKTVYRAFDELLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLNHDSMMIFYGSWIDVNNRTFNFITELFTSGTLREYRQKYKRVDIRAVKIWARQILSGLEYLHSHNPPVIHRDLKCDNIFVNGHQGRVKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYDEKYNELVDIYSFGMCMIELLTFEFPYSECANPAQIYKKVTSGKLPNAFYRIPDLEARKFVGRCLSNVSDRPSATELLLDPFLAVDQLEIPLPPNIPLFPNHTLQLNSAPLVPIEHHHDQTKSAEMTITGSINEEDNTVFLKVRISDITGHTRHVFFPFDTLKDTAIQVAMEMVQELEISHLEPLEIAAMIDHEVSALVPSWRDRVKCHHQRQHSFNYEEDEDVNNHHPFFLSSSPSSPRGSGHMSASNSFKTLVRGHHYPFAQEGSQDDVFMNNDDASSQASMNSFKCSTFQFCDPCHEDEHDGTERNKCTTLSCRGGEEGEPRLANPVLNPPRMECSCGCRFGSGHGCPRLTRIRSCPHERRSLQLQRSMMLEEIYKYKRRFFNTIGAVENIGFGHPLRGGVCFPRV* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0649 622 SUPERFAMILY Protein kinase-like (PK-like) 39 325 IPR011009 -
Vra4g0649 622 SMART serkin_6 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0649 622 PANTHER WNK KINASE 3 612 - -
Vra4g0649 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vra4g0649 622 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Vra4g0649 622 ProSiteProfiles Protein kinase domain profile. 38 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0649 622 Gene3D Transferase(Phosphotransferase) domain 1 121 301 - -
Vra4g0649 622 CDD STKc_WNK 36 296 - -
Vra4g0649 622 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0649 622 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0649 Vra-Chr4 12055025 12059167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0649 19 436 MAP Kinase Kinase Kinase AT3G51630 66.033 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra4g0649 Pkinase 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0649 K08867 - gmx:100272206 1057.74