Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0646 ATGATGAGTTTCCGAGAGGGAAAGTTAGGAGGAGAAGAGAAGGAATGCGAAGAATCGGTGTTGGGGAGCACAGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGTTTACAATTGATGAGAATTTATTGGTTGACCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTATGGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGTTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCGCTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCATTGCGTAAATATTTGATTAGTATCCGTCCTAAACTATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCCTTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTGAAACCTGACAATCTTTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCAGATTTTGGCCTCGCAAGAGAAGAAACTGTGACGGAAATGATGACTGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGTTGTATAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTCCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCGAGCATACCAGATGATATATCCCCTGAACTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCAAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTGAATGCATTTCTCTTCACTCTCTCACCACCATCACCTCCTTTGGCAGTACCTAACAATGAAGCTGAGGTGGCTACAAGCAGCAATGGCACCATTACTGAGTTTTCTGCCCGAAACAAAGGAAGGTTTGGGTTTCTTCGGCAATTGTTTTCTTCAAAGAGAACCAAAAACTAA 1113 0.4259 MMSFREGKLGGEEKECEESVLGSTESKSVRENGSLAATQFTIDENLLVDPKLLFIGSKIGEGAHGKVYEGRYGDQIVAIKVLHRGSTSEERVSLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLISIRPKLLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTADQKSVKLADFGLAREETVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPDDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLAVPNNEAEVATSSNGTITEFSARNKGRFGFLRQLFSSKRTKN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0646 370 PANTHER SERINE-THREONINE PROTEIN KINASE 20 346 - -
Vra4g0646 370 Pfam Protein tyrosine and serine/threonine kinase 55 314 IPR001245 GO:0004672|GO:0006468
Vra4g0646 370 SUPERFAMILY Protein kinase-like (PK-like) 50 335 IPR011009 -
Vra4g0646 370 MobiDBLite consensus disorder prediction 1 28 - -
Vra4g0646 370 Gene3D Phosphorylase Kinase; domain 1 41 132 - -
Vra4g0646 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vra4g0646 370 MobiDBLite consensus disorder prediction 1 21 - -
Vra4g0646 370 CDD STKc_MAP3K-like 59 314 - -
Vra4g0646 370 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 20 346 - -
Vra4g0646 370 SMART serkin_6 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0646 370 Gene3D Transferase(Phosphotransferase) domain 1 136 350 - -
Vra4g0646 370 ProSitePatterns Protein kinases ATP-binding region signature. 59 80 IPR017441 GO:0005524
Vra4g0646 370 PRINTS Tyrosine kinase catalytic domain signature 129 142 IPR001245 GO:0004672|GO:0006468
Vra4g0646 370 PRINTS Tyrosine kinase catalytic domain signature 167 185 IPR001245 GO:0004672|GO:0006468
Vra4g0646 370 PRINTS Tyrosine kinase catalytic domain signature 241 263 IPR001245 GO:0004672|GO:0006468
Vra4g0646 370 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Vra4g0646 370 ProSiteProfiles Protein kinase domain profile. 53 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0646 Vra-Chr4 12000361 12004150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0646 41 370 MAP Kinase Kinase Kinase AT5G01850 74.157 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra4g0646 PK_Tyr_Ser-Thr 2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0646 - - qsu:111990547 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0646 4 12000361 12004150 Vra4g0646 4 12000361 12004150 ECH