Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0643 ATGACGCAGCGGCGGTTTCTGGACACGGAGCTGAGCATGCCACCGTCGAACGGCAACAACACGCACGACACGTTCATCAGCGACGCCAACTTCGACACCAACATGGTGATCATTCTGGCGGCTCTGCTGTGCGCTCTGATATGCGCGCTGGGGCTGAACTCCATCGCGCGGTGTGCGCTGCGGTGCGGGCGGCGCTTCGGCGACGAGACAGAGGAGCAGGCTGCGGCGCGCCTTGCCGGAACCGGGCTAAAGCGGCGTGAGCTCAGCCGCATCCCGGTGGCGGTGTACGGTGCCTCCGGCGAGACTATCCCGGCGACAGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGGGACAGGGTTCGAATGCTGCCCAAGTGCAACCACGGATTCCACGTGCACTGCATTGACACGTGGCTCCTCTCCCACTCCTCCTGTCCCAACTGCCGCCACTCCCTCCTCGAGAAACCCACAGCGCCGGAAAGTGGGTCCCGCCGTAGGAGCGACGTCGTGGTGTTGGTGGAGCCGCCGAGTTGA 537 0.6462 MTQRRFLDTELSMPPSNGNNTHDTFISDANFDTNMVIILAALLCALICALGLNSIARCALRCGRRFGDETEEQAAARLAGTGLKRRELSRIPVAVYGASGETIPATECPICLGEFEKGDRVRMLPKCNHGFHVHCIDTWLLSHSSCPNCRHSLLEKPTAPESGSRRRSDVVVLVEPPS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0643 178 SUPERFAMILY RING/U-box 101 157 - -
Vra4g0643 178 MobiDBLite consensus disorder prediction 156 178 - -
Vra4g0643 178 CDD RING-H2_EL5_like 107 150 - -
Vra4g0643 178 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 164 - -
Vra4g0643 178 SMART ring_2 108 149 IPR001841 -
Vra4g0643 178 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Vra4g0643 178 PANTHER RING-H2 FINGER PROTEIN ATL74 1 164 - -
Vra4g0643 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 158 IPR013083 -
Vra4g0643 178 SMART FANCL_C_2 104 157 - -
Vra4g0643 178 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0643 Vra-Chr4 11947303 11948863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0643 15 172 C3H Transcription Factor Family AT3G10910 57.831 1.41e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0643 K19040 - gmx:100810195 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0643 4 11947303 11948863 Vra4g0643 4 11947303 11948863 ECH