Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0641 ATGATGATTGCAGAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGACCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAGGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCCAAGTTAAATCCACTGGGAAATCGGAAGATTGTTCAACCCAATGTTCATAAGTTCAATGCTGGGAACAATCAGAACGACCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGCTGACATGGGTTCCTTCCCCGGTAGTGGAAATGGGCTCAGATCTCTGCCTTCGACTAATAATGTGACCCTTCGCAATAACGATTCGCCCTGTGCCAGAAAATCCCAATAA 468 0.4701 MMIAERKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEASVKRSKLNPLGNRKIVQPNVHKFNAGNNQNDLRWPMDLVEQKPLVNQFADMGSFPGSGNGLRSLPSTNNVTLRNNDSPCARKSQ* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0641 155 PANTHER DNA-BINDING DOMAIN 4 145 IPR044808 GO:0003700|GO:0009873
Vra4g0641 155 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Vra4g0641 155 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Vra4g0641 155 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Vra4g0641 155 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Vra4g0641 155 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Vra4g0641 155 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Vra4g0641 155 PANTHER EREBP TRANSCRIPTION FACTOR 4 145 - -
Vra4g0641 155 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Vra4g0641 155 MobiDBLite consensus disorder prediction 127 155 - -
Vra4g0641 155 MobiDBLite consensus disorder prediction 130 155 - -
Vra4g0641 155 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0641 Vra-Chr4 11936506 11937400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0641 6 69 AP2-EREBP Transcription Factor Family AT3G16770 84.375 1.26e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra4g0641 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0641 K09286 - vra:106773426 300.441