Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0640 ATGGGGTGTTTCACTGTATTGAAGAGCAAGAAGAAAAAGTCTGATCCTATTACATATGTTAAACGTGTAAGCCATAATGAGCATGTGCCTACAGTGCTACCTGAACCTCAAACTCGTACTCGCTCGCTCCAGTCTGCTCCTCCTAGTTTTAAGACCAGAGTGAAACCCATTCAACCTATTAGTAAAGTCAATAGCAACAGAACAAGAACATTATCTGCTCCATCAACTCTTGATGCCGCAGAACAAGATGCTTTGGCCTCAATTGAGTATGAGGAGCGTTCATCTAGCCCACAACCCTTACCACTTCCATCCCCACAGGGTGGTGCTGTATTGAAGGCTATTGGCAGCTTTAAGTCAGTTACAGCTAGTGGTCCTCTATCTGCTTCTGGACCTTTGCCACTTCCACCTACCGGTTCACTTCGGAATTTTCTGTATGATGAAATTGCCACTGCTTGTCACAATTTCTCTTCTGATAGATGCATGTCAGAATGTCTTTCATCCACCATATATAAGGCTTCTTTTGGTGATGATGTTTCAAGTTCAAAGAAGTTTGAAGCCACTGTCACACGACTTCACCCATCATCTCAGGGCTTGAAGGAATTCATAAATGAAGTTAATACTCTTGCATCCTTGCAACATCCAAACCTCTGCAAATTGCTAGGATTTCATGCTCGAGAGAGTTCAGAACATAGAATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGATCGCTTATTGTATGGGAGATCTGATGGGCCATTAATAGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAAGGTTTAACTTTCTTGCATGAAGAAGGGCCATTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCCGAGGAAGAGATTTCAAGCAGTTCATCTGCTGTTGGAAACCTATCAATGGAGACACTAGAGAAAGGAATGCTCACCCCAAAGAGCAACGTATGGAGCTTTGGAATATTTCTTCTGGAGCTACTTACAGGAAGAAAGAATCTTGATAGCCGTCACCCAAAGGAAGAGAGGAATTTAGTGAAGTGGAGCCGGCCCTTCCTAGCCGACAACTACCGTCTGTCGTTGATCATGGATCCTCAACTCAAGGGTCGATTTCCTTCTAAAGCAGCAAGAACAATAGCTGACATTGCACAAAGATGCCTTCAAAAGGAGCCATCAGAGAGACCTACCATGAGAACTGTTGTTGAGCATCTGAAGATGATACAGGATTTGAAATACTCATGCAGGTTCCCTCTGCAAGAGCCAGCAACGAACTCTGGAAAACATATGTCAAGATCACCAAGTCTGAATGGCATCATCTGCCCAGTACCAAGGTTGAATTTCTCACCATCACCACCATCTGGGGTTCCAGCAGTAGCTGTTTCACCTCCAAGATGGTCTGGTGGAGTGCCCCTTCTACCACCTCGTGCATGTTCTTCCAGTCTCTCTCTGGAGGAACTTGATAGGCAGGAAAGCCGCAAGTCATCATCCTCAGCCTCTAGAAGGGCTAGTGTTGAAGGATTTTGA 1602 0.4388 MGCFTVLKSKKKKSDPITYVKRVSHNEHVPTVLPEPQTRTRSLQSAPPSFKTRVKPIQPISKVNSNRTRTLSAPSTLDAAEQDALASIEYEERSSSPQPLPLPSPQGGAVLKAIGSFKSVTASGPLSASGPLPLPPTGSLRNFLYDEIATACHNFSSDRCMSECLSSTIYKASFGDDVSSSKKFEATVTRLHPSSQGLKEFINEVNTLASLQHPNLCKLLGFHARESSEHRMLVYERLYHGSLDRLLYGRSDGPLIDWNTRMKIAICAAQGLTFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPEEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLADNYRLSLIMDPQLKGRFPSKAARTIADIAQRCLQKEPSERPTMRTVVEHLKMIQDLKYSCRFPLQEPATNSGKHMSRSPSLNGIICPVPRLNFSPSPPSGVPAVAVSPPRWSGGVPLLPPRACSSSLSLEELDRQESRKSSSSASRRASVEGF* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0640 533 Gene3D Phosphorylase Kinase; domain 1 136 236 - -
Vra4g0640 533 PANTHER OS01G0822200 PROTEIN 45 532 - -
Vra4g0640 533 SUPERFAMILY Protein kinase-like (PK-like) 133 441 IPR011009 -
Vra4g0640 533 MobiDBLite consensus disorder prediction 31 51 - -
Vra4g0640 533 ProSiteProfiles Protein kinase domain profile. 155 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0640 533 MobiDBLite consensus disorder prediction 28 51 - -
Vra4g0640 533 Gene3D Transferase(Phosphotransferase) domain 1 238 442 - -
Vra4g0640 533 Pfam Protein tyrosine and serine/threonine kinase 169 430 IPR001245 GO:0004672|GO:0006468
Vra4g0640 533 PANTHER OS01G0588500 PROTEIN-RELATED 45 532 - -
Vra4g0640 533 MobiDBLite consensus disorder prediction 507 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0640 Vra-Chr4 11928419 11933673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0640 127 451 Receptor kinase-like Gene Family AT4G02010 36.527 1.62e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vra4g0640 PK_Tyr_Ser-Thr 7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0640 - - gmx:100809117 949.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0640 4 11928419 11933673 Vra4g0640 4 11928419 11933673 ECH