Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0636 ATGATGCAATTCAGCGTGTGTGTGTTGTTTCTGGTTCTTCTTGCTCCGCTTATGTTGGTGGTTTCTGCGGACACTGGTTTCAATGATGATGTGTTGGGTTTGATCGTGTTCAAGGCTGGTTTGGAAGATCCCAAAAGGAAACTCTCTTCGTGGAATGAGGACGATAACAGTCCTTGCAATTGGGAAGGTGTGAAGTGTGATCCTTCATCCAATAGGGTCACTGCTCTTGTTCTTGACGGGTTCTCTCTTTCTGGGCATGTTGATAGGGGCTTATTGAGGTTGCAGTTCCTTCAAATTCTCTCCCTTTCAAGGAACAACTTCACAGGGCCCATAAACCCTGATCTGCCTGGCCTTGGGAGTTTACAAACTGTGGACTTCAGTGACAACAACCTCTCTGGGGAGATCCCAGAAGGGTTTTTCCAACAATGTGGCTCTCTCAGGACAGTTTCATTTGCCAAGAACAACCTCACAGGTAAAATTCCCGAGTCCTTGAGTTCCTGCTCCAATTTGGCAACTGTTAACTTCTCCTCTAATCAGCTCCACGGGGAATTGCCTAATGGAGTGTGGTTCTTGAGGGGGCTACAGTCACTTGATCTGTCGGACAACATGCTGGAGGGAGAAATTCCTGAAGGCATTCAGAATCTGTATGATATGAGGGAGTTGAGTCTCCAGAGGAACAGGTTTAGAGGAAAGCTTCCTGCGGATATTGGAGGCTGCTTACTTCTGAAATCACTTGATTTGAGTGGTAATTTTCTCTCTGGGGAACTCCCTCAGTCAATGCAGAGACTCACTTCTTGCACATCACTTAGTTTGCAGGGAAATTCATTCACAGGGGTCATTCCTGACTGGATTGGGGAATTGAAGAATCTAGACATGTTGGATCTTTCTGCCAATTCATTTTCTGGTTGGATTCCTAAGTCATTAGGAAATCTTGACTCTTTGCATAGATTGAATTTGTCCAGGAATCAGTTGACAGGAAACCTGCCTGATTCTATGCTGAACTGCACCAAGCTTTTGGCTCTTGACATCAGCCACAATCACTTGGCAGGCTATGTTCCTTCATGGATTTTTAAGATGGGTGTGCAAAGCATATCACTTTCTGGGAATGACTTCAGCAAGGGCAATTATCCCGCACTCAAGTCTACACCTACATCTTATCATGGTCTCGAGGTTCTGGATTTGTCATTCAATGCATTCTCTGGTGTGCTTCCATCTGGCATTGGAGGACTTAGTAGCCTACAAGTCTTCAATATCTCTGCTAACAATATCTCTGGTCCTATTCCTGTGGGTATAGGTGAACTTAAGTCTTTGTACATTATTGACCTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGAAATAGAAGGGGCAATTTCACTCAGGGAGCTAAGGCTGCAAAAGAACTTCCTAGGTGGGAGAATTCCAGCCCAAATTGACAAGTGTTCGTCTCTAACATTTTTGATTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTCACCAATCTTCAATATGTAGATTTGTCATGGAATGAACTCTCTGGAAGTTTACCCAAGGAGTTAACAAATCTTTCTCATCTTTTCTCATTCAATGTGTCCAACAACCACCTTGAAGGTGAACTACCTGTGGGTGGCTTCTTCAACACCATCTCTTCCTCATCAGTCTCCGATAACCCATTGCTGTGCGGTTCCGTTGTCAACCACTCTTGTCCATCTGTTCATCCTAAACCTATTGTCCTGAACCCCAATTCTTCAGGTTCCAACTCCAGCATTTCCTCACAGACCCGTCGGCATAAAATCATACTAAGTATCTCTGCTCTTATTGCTATTGGAGCAGCTGCTTTTATCGCCATTGGTGTGGTGGCTATTACTGTCCTAAATATCCACGTGCGTTCCTCAATGGAGCGTATGCCTGCTACATTTGCATTGTCTGGGGGAGAGGACTATAGTGGTTCGCCTGCAAATGATCCAAACTATGGCAAACTTGTCATGTTTTCTGGTGATGCAGATTTTGCTGATGGAGCACATAACCTTCTCAATAAGGAAAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTGTATCGAACTTTTCTTCGCGATGGACACGCAGTTGCAATCAAGAAGCTTACAGTCTCCAGTTTGATCAAGTCCCAGGAAGACTTTGAGAGAGAAATTAAAAAGCTTGGAAAGATCAGGCACTCCAATCTTGTGGCACTTGAAGGTTATTATTGGACATCATCCTTGCAACTCCTTATTTATGAGTACCTTTCAACTGGGAGTTTGCATAAACTTCTGCATGATGACAACAGCAAAAACGTCTTCTCATGGCCACAAAGATTCAAGATTATTCATGGCATGGCAAAAGGGTTGGCCCATTTGCATCAAATGAACATAATCCACTACAATCTGAAATCAACCAATGTTCTCATTGATTGTTCTGGTGAGCCAAAGGTTGGAGATTTCGGCTTGGTGAAACTACTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTAGGGTACATGGCACCGGAGTTCGCATGCCGTACGGTTAAGATCACTGAGAAGTGTGACATATATGGTTTTGGGATCCTGGTGCTGGAAGTGGTGACAGGAAAAAGACCTGTGGAATACATGGAGGATGATGTGGTGGTTCTCTGTGACATGGTTAGGGGTGCATTGGAAGAAGGCAATGTGGAGCAATGTGTTGATGGAAGGCTCCTCGGTAACTTTGCTGCAGAGGAAGCAATTCCTGTGATAAAATTGGGGTTGATCTGTGCATCACAAGTGCCATCAAACCGTCCAGATATGGCTGAGGTAGTCAACATACTAGAATTAATCCAATGCCCTTCAGAAGGACTACAGGAATTAGAATGA 2907 0.4417 MMQFSVCVLFLVLLAPLMLVVSADTGFNDDVLGLIVFKAGLEDPKRKLSSWNEDDNSPCNWEGVKCDPSSNRVTALVLDGFSLSGHVDRGLLRLQFLQILSLSRNNFTGPINPDLPGLGSLQTVDFSDNNLSGEIPEGFFQQCGSLRTVSFAKNNLTGKIPESLSSCSNLATVNFSSNQLHGELPNGVWFLRGLQSLDLSDNMLEGEIPEGIQNLYDMRELSLQRNRFRGKLPADIGGCLLLKSLDLSGNFLSGELPQSMQRLTSCTSLSLQGNSFTGVIPDWIGELKNLDMLDLSANSFSGWIPKSLGNLDSLHRLNLSRNQLTGNLPDSMLNCTKLLALDISHNHLAGYVPSWIFKMGVQSISLSGNDFSKGNYPALKSTPTSYHGLEVLDLSFNAFSGVLPSGIGGLSSLQVFNISANNISGPIPVGIGELKSLYIIDLSDNKLNGSIPSEIEGAISLRELRLQKNFLGGRIPAQIDKCSSLTFLILSHNKLTGSIPAAIANLTNLQYVDLSWNELSGSLPKELTNLSHLFSFNVSNNHLEGELPVGGFFNTISSSSVSDNPLLCGSVVNHSCPSVHPKPIVLNPNSSGSNSSISSQTRRHKIILSISALIAIGAAAFIAIGVVAITVLNIHVRSSMERMPATFALSGGEDYSGSPANDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEDFEREIKKLGKIRHSNLVALEGYYWTSSLQLLIYEYLSTGSLHKLLHDDNSKNVFSWPQRFKIIHGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKVGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGNVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVVNILELIQCPSEGLQELE* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0636 968 SUPERFAMILY Protein kinase-like (PK-like) 686 958 IPR011009 -
Vra4g0636 968 Gene3D Ribonuclease Inhibitor 307 582 IPR032675 -
Vra4g0636 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0636 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 959 - -
Vra4g0636 968 SUPERFAMILY L domain-like 363 569 - -
Vra4g0636 968 Gene3D Transferase(Phosphotransferase) domain 1 762 963 - -
Vra4g0636 968 CDD STKc_IRAK 691 957 - -
Vra4g0636 968 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 959 - -
Vra4g0636 968 SUPERFAMILY L domain-like 46 372 - -
Vra4g0636 968 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vra4g0636 968 SMART LRR_sd22_2 287 313 - -
Vra4g0636 968 SMART LRR_sd22_2 434 457 - -
Vra4g0636 968 SMART LRR_sd22_2 506 532 - -
Vra4g0636 968 SMART LRR_sd22_2 191 214 - -
Vra4g0636 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Vra4g0636 968 Pfam Leucine Rich Repeat 242 262 IPR001611 GO:0005515
Vra4g0636 968 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Vra4g0636 968 Gene3D Phosphorylase Kinase; domain 1 675 761 - -
Vra4g0636 968 SMART LRR_typ_2 287 310 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 191 214 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 434 458 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 215 239 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 311 335 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 118 142 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 530 554 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 386 409 IPR003591 -
Vra4g0636 968 SMART LRR_typ_2 506 529 IPR003591 -
Vra4g0636 968 Pfam Protein kinase domain 686 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0636 968 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Vra4g0636 968 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Vra4g0636 968 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Vra4g0636 968 Gene3D Ribonuclease Inhibitor 27 306 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0636 Vra-Chr4 11893320 11897579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0636 1 965 Receptor kinase-like Gene Family AT5G01890 61.831 0.0 1133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vra4g0636 Pkinase 6.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0636 - - gmx:100790365 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0636 4 11893320 11897579 Vra4g0636 4 11893320 11897579 ECH