LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra4g0635	ATGTGGAGCATGGATCGGTACTGTGTTTGTGTTCCATTGTTCGTGTGGTTGGTATTGGCTATTGAGCTTGTTGTAGCGCAGAATTTTAAGCCTGCAGATAATATCCTGCTGGATTGTGGAGGTCCTCCATCTAGTACTGATACCGATGGCCGTGAATGGACCACTGATGTTGGTTCCAAGTTTGGTTCCTCTTCGGAAAAATCCACCACCGTATCGNAGGCNGCAACTCAAGANCCTGCCGTCCCCCAGGTGCCCTACATGACAGCACGTGTGTTCCACGCGCCGTTTACCTATGCTTTCCCGGTGGCTTCCGGTTGGAAGTTCCTCCGGCTGCANTTTTACNCGGCTTCTTACTCCAATCTCAATGCATCTGATGCCCTCTTTGCGGTGACGGCGAATTCATACACGCTTCTTAGGAACTTTAGTGTTGCTCAGACCACCCTGGCTTTGAATTATGCCTACATTTTGAAGGAATTTGCCATCCATGTAGATGGGAAGACCTTGAATGTGACTTTCACTCCTTCTACCAACGCATCCAATGCTTACGCGTTTGTTAATGGGATCGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATAGTGGGTACAAATACTGCTTACACTATTGATAACAGCACTGCACTTGAGAATGTTTATAGGTTGAATGTGGGTGGGAATGATATCTCTCCCTCCCGTGATACTGGCATGTTTAGGTCATGGTCTGATGATGTTCCCTTCCTATTTGGTGCTGCATTTGGAGTTACAGAGCCTGCTGATTCAAATGTGAAGTTTGAGTATCCTCCGGGCACACCAAGCTATATTGCTCCACTTGATGTCTACACTACGGCCAGATCAATGGGCCCGGATATGACGATCAACATGAATTACAACTTGACTTGGATCTTCAACATTGATTCTGGGTTTTCCTATCTAGTGAGACTTCATTTTGCTGAGGTATCATCAAAAATAACCAAGATTAATCAAAGAGTATTTGATATATTCCTCAATAATCAAACAGTTACCCAGGCTGATGTTATTGCCTGGGCAAAAGATTTTGGCCTTTCACATTCTAATGGGGTGCCTGTGCATAAAGATTATGTTGTATTTATTCCCGATGCTGGAGAACCACGGCAGGACCTGTGGCTTGCATTGCATCCAAATACAAAAGACAAGCCCATGTATTATGATGCCATATTGAATGGAGTGGAGATATTCAAAATTAATGATAGTGCTGGAAATCTGGCAGGGACAAATCCTATTCCTCCCCCTGTGCAAGATATAATTGACCCGTCAACAGCTAGAGCACATAATCATGGTAAATCAAAGAATCATACAGGTATAATTGCAGGAGGTGTTGTTGGAGGTGTTGTTGCAGTACTTGTTATTGGGCTATTTGCTTTTTCTTCTTCGCGTTGCCGTAGGCAAGGAAAGGATTCTGGTGCAAGTGAAGGGCCATCTGGCTGGCTTCCACTTTCTCTTTATGGTGGTACTTCACACTCTGCAGCTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCTCTCCCATCAAACCTTTGCCGTCATTTCTCATTTGCTGAAATCAAGTCTGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTTGGAGGATTCGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTTGCAATTAAACGTGGGAATCCACTATCTGAGCAGGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCTCTTATTGGATACTGTGAAGAAAACACTGAAATGATCCTCGTTTATGATCATATGGCCTATGGAACACTCAGGGAGCATTTGTACAAGACCCAGAAACCTCCACTTCCATGGAAACAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATTTACACACTGGTGCTAAACACACAATCATCCACCGTGATGTGAAGACAACAAACATTTTACTGGACGAGAAGTGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACATTGGATAATACCCATGTAAGTACTGTGGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTANTCATTTGGGGTGGTTCTCTTTGAGATATTNTGTGCTCGTCCAGCTTTGAACCCAGCCCTTGCTAAGGAGCAAGTGAGTCTNGCTGAGTGGGCAGCTCATTGCTACCTGAAAGGCATTCTTGANCAAATCATTGATCCATATCTAAAAGGCAAGATAGCTCCAGAATGNTTCAAGAAGTTTGCNGAGACNGCGATGAAGTGCGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGTGCAGAGGAAAGTGGCAACGGCTTTGGCGACATTCACAATGAAGAGGAGCCCACGTATACAGATTCTAAAGGAAAGAAAGACTCTGATGCNATGGGGGGTTATGATGGTAATGTGACTGATTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGGCGTTAA	2703	0.444	MWSMDRYCVCVPLFVWLVLAIELVVAQNFKPADNILLDCGGPPSSTDTDGREWTTDVGSKFGSSSEKSTTVSXAATQXPAVPQVPYMTARVFHAPFTYAFPVASGWKFLRLXFYXASYSNLNASDALFAVTANSYTLLRNFSVAQTTLALNYAYILKEFAIHVDGKTLNVTFTPSTNASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGTNTAYTIDNSTALENVYRLNVGGNDISPSRDTGMFRSWSDDVPFLFGAAFGVTEPADSNVKFEYPPGTPSYIAPLDVYTTARSMGPDMTINMNYNLTWIFNIDSGFSYLVRLHFAEVSSKITKINQRVFDIFLNNQTVTQADVIAWAKDFGLSHSNGVPVHKDYVVFIPDAGEPRQDLWLALHPNTKDKPMYYDAILNGVEIFKINDSAGNLAGTNPIPPPVQDIIDPSTARAHNHGKSKNHTGIIAGGVVGGVVAVLVIGLFAFSSSRCRRQGKDSGASEGPSGWLPLSLYGGTSHSAASAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDHMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVXSFGVVLFEIXCARPALNPALAKEQVSLAEWAAHCYLKGILXQIIDPYLKGKIAPEXFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGDIHNEEEPTYTDSKGKKDSDAMGGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR*	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra4g0635	900	SUPERFAMILY	Protein kinase-like (PK-like)	516	816	IPR011009	-
	Vra4g0635	900	Pfam	Protein tyrosine and serine/threonine kinase	548	742	IPR001245	GO:0004672\|GO:0006468
	Vra4g0635	900	PANTHER	OS07G0166700 PROTEIN	20	851	IPR045272	GO:0004714\|GO:0006468
	Vra4g0635	900	MobiDBLite	consensus disorder prediction	859	893	-	-
	Vra4g0635	900	CDD	STKc_IRAK	548	814	-	-
	Vra4g0635	900	MobiDBLite	consensus disorder prediction	826	900	-	-
	Vra4g0635	900	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	663	675	IPR008271	GO:0004672\|GO:0006468
	Vra4g0635	900	Gene3D	Transferase(Phosphotransferase) domain 1	619	834	-	-
	Vra4g0635	900	Gene3D	-	220	414	-	-
	Vra4g0635	900	Gene3D	-	34	194	-	-
	Vra4g0635	900	Pfam	Malectin-like domain	37	413	IPR024788	-
	Vra4g0635	900	MobiDBLite	consensus disorder prediction	422	447	-	-
	Vra4g0635	900	SMART	serkin_6	542	816	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra4g0635	900	Gene3D	Phosphorylase Kinase; domain 1	527	618	-	-
	Vra4g0635	900	MobiDBLite	consensus disorder prediction	830	852	-	-
	Vra4g0635	900	ProSiteProfiles	Protein kinase domain profile.	542	816	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra4g0635	900	ProSitePatterns	Protein kinases ATP-binding region signature.	548	571	IPR017441	GO:0005524
	Vra4g0635	900	PANTHER	-	20	851	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra4g0635	Vra-Chr4	11872000	11875541	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra4g0635	18	900	Receptor kinase-like Gene Family	AT3G51550	73.168	0.0	1284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Vra4g0635		Malectin_like	6e-40	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra4g0635	-		-	gmx:100499644	1580.07