Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0631 ATGATGGACAACCTTGGCGGCGGTTCTAGTACTCGTATGAAAGCAATCGAGGAGCTTCTCAGAGAAGGTCGTGATTCTGCTACACAGCTCAGGAGTATCATCAATGGGAATGGTGAAAATTCTCCTTCAGCACAGAAACTCGTGAAGGAGGTGTTCATGTCCTTCCACAACTCCCTCTTGCTCTTGAACAACAACCCCACTTCTGAATTTCACGATGCCTCCAATGTTCAACTTTGGGACTCTCCCAAACTCGAGGACTCTCCAGAGAGCAATTGCAAGAACTCCACGGTTAAAGCACGAAGAGGGTGTTACAAGAGAAGAAGAACTGAACAAACAAGAGAGAAGGAGTCCGAAGCTCCAATCGATGATGGCCACCAATGGAGGAAGTATGGTCAAAAGGAGATTCTCAATGCCAAATTCCCAAGGAGCTACTTTAGGTGCACTCACAGAGACCAGGGTTGCCAAGCGACAAAGCAGGTGCAAAGAGTTCAGGAGGATCCAATCTTGTACAAGACAATCTACTACGGTGAACACAGTTGCAAGAACATGGGAAACCCCGAGATCATACTCGACATGTCTCCTTCATCTTCTTCCAAGTTTCTTAGCTTCAACAATTCCTTCTCTACTCTATCAAAACAAGAGTGTGCCTTTCTCTCATCTTCTTTCCCTTCATCTGTCAAAAGGGAGTGCAAAGAGGAGATTCCACCCTCAACTTCCTCCAATGATTACCTCATCTCTTCTGACCTCACCTTTGATGATGCTTCACCAAGACATGTCACTCTATCATCTTCAACACCTGACTCTGAGTACAAGGCTGTCGACTTTCCAGATCTCTTTGATGATGTCTTTCAAGACTTCCTTGAATTTAGATAG 873 0.4525 MMDNLGGGSSTRMKAIEELLREGRDSATQLRSIINGNGENSPSAQKLVKEVFMSFHNSLLLLNNNPTSEFHDASNVQLWDSPKLEDSPESNCKNSTVKARRGCYKRRRTEQTREKESEAPIDDGHQWRKYGQKEILNAKFPRSYFRCTHRDQGCQATKQVQRVQEDPILYKTIYYGEHSCKNMGNPEIILDMSPSSSSKFLSFNNSFSTLSKQECAFLSSSFPSSVKRECKEEIPPSTSSNDYLISSDLTFDDASPRHVTLSSSTPDSEYKAVDFPDLFDDVFQDFLEFR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0631 290 SUPERFAMILY WRKY DNA-binding domain 119 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0631 290 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 13 258 - -
Vra4g0631 290 SMART WRKY_cls 121 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0631 290 Gene3D WRKY domain 91 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra4g0631 290 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 258 IPR044810 GO:0003700
Vra4g0631 290 ProSiteProfiles WRKY domain profile. 116 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra4g0631 290 Pfam WRKY DNA -binding domain 122 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0631 Vra-Chr4 11816783 11818662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0631 12 180 WRKY Transcription Factor Family AT3G56400 39.548 2.30e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra4g0631 WRKY 4.8e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0631 4 11816783 11818662 Vra4g0631 4 11816783 11818662 ECH
Vra4g0631 4 11816783 11818662 Vra9g0661 9 7543740 7545035 PCT