Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0630 ATGAGTTCTGATGAGACCTTGCTATTGGATTCGGATCCGCGCCCTGTGATTGTTCACCGCCGCGGGAAATCGGGTTCCCGGACCTACCTCTGTGGCCATGGTTCCTTCTCGTCTTCCGTGTTCGAGGCGGCTATTGCTGACATCAGCGATTTGGACGTGAAGGAGCGAAACAAGGAGGTTTTGTCTGGCGATTGCAGCTTCCAGACTGCGTCGTTTAGTAATAGTAACAGCTCTGATAGGTGTGCTGTTGAGTCGAAGTTCCCCTGGCAGTTTCCCTTGGAATGCTCCACGCGCGAGAAGAGGCGCTCGGCATCGTGGGGTGCAATGGAACTGCATGGTGCTGATAACCGGAGTGTTCCCTTTGAGATATCCGGAGCTTCGTCTCATGTGCAGGATAGGTTGAATAGTAAATCGCAGAGGATTAGGCACAGGAGTGTGCAATTTGATGATCCTGCTTTTCAGGAGGATGGTGCCAGGTTGATCTATATTAATGATCCCAGGAAGACCAACGACAAGTATGAGTTCACTGGGAACGAGATCCGAACTAGTAGATACACCTTTGTTACCTTTTTGCCCAAGAATCTTTTCATTCAGTTTCATAGGGTTGCGTATCTGTATTTCCTTGCTATTGCAGCGCTCAATCAACTTCCTCCACTGGCTGTGTTTGGGAGGACTGTGTCTCTTTTTCCTCTGTTGTTTGTGCTTTGTGTCACGGCTATTAAGGATGGCTATGAGGATTGGCGGCGGCACAGGTCAGATCGCAATGAAAACAACCGGGAGTCTCTGGTGCTTCAGTCCGGTGATTTCCGATCGAAGAAGTGGAAAAAAGTACAAGCTGGGGAGGTTGTTAAGATCTTTGCTGATGAGACAATTCCGGCTGATATGGTCTTGTTGGGGACGAGTGATCAAAGTGGGCTTGCCTATATTCAGACCATGAATTTGGATGGAGAGTCAAATTTGAAGACAAGGTATGCTAGGCAGGAAACAGCTTCGGTGGTTACTTCGGAATCTTGTGATGTTTTTGGGGTAATTAGGTGTGAGCAACCGAACCGGAATATTTATGAGTTCACTGCCAACATGGAGTTCAATGGACTTAAGTTTTCCCTTAGCCAGTCAAACATTGTTCTCCGTGGCTGCCAGCTTAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCAGGGCAGGAAACAAAAGCAATGCTGAACAGCGCAGCTTCTCCTTCCAAGAGAAGCAGACTTGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCTGTTTTTCTTTTTATCATGTGTTTGGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTACGCCACAAGAACCAGCTAGATACCTTGCCTTACTACAGAAAAAGATACTTCACCAACGGACCCGATAATGGAAAGAAATACAAGTATTATGGGATTCCGATGGAAGCATTTTTCTCCTTCTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACAGGGATATGTATGATGCCAGCTCTGGGTCAAGGTTTCAGTGTAGATCATTAAATATAAACGAAGATTTGGGTCAAATACGCTATATATTTTCGGACAAGACTGGAACACTCACAGAAAACAAAATGGAATTCAAGAGGGCCAGCGTACATGGGAAGAATTATGGAAGCTCCTTGAATGTTGTTGATAATACAGCTGTGGATGTTACTCCTAAACGCAGATGGAAGCTCAAATCTGAACCTGTAGTGGATTCTGAACTGATGATGATGTTACGGGAAAACTCCAATAGAGAAGAAAGAGTTTCTGGTCATGAGTTTTTCCTTACACTGGCTGCTTGTAACACCGTAATCCCTATACTTGGTGATGGTGGATTTTCCAGACATGGAACAAATGAATTAAAAGATGATATTAGATGCATTGATTACCAGGGAGAATCTCCTGATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACTCTTTTTGAACGTACATCAGGACATATCGTTATTGATGTCAACGGTGAGAAACTCAGATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAGAGAATGTCTGTTGTTATTCGGTTTCCTGACAATGCGGTAAAGGTGTTAGTCAAAGGTGCTGACACTTCAATGTTTAGCATTTTGGAAAGTGGCAGTGAGAGTAATATTAACATACTGCACACAACTCAGAGCCATCTGAACGAGTATTCTTCACAAGGTTTGCGCACTCTTGTGATTGGCTCCAGGGATCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCTGTTATGAAGAGGCAAGCACTTCGTTGACCGACAGAGCTACTAAACTAAGGCACACAGCAGCTCTTATAGAAAGCAATTTAAAGTTACTTGGAGCAACTGGAATTGAGGACAAGCTACAGGAGGGAGTACCAGAAGCCATTGAGGCTCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAAGAGACAGCAATTTCAATTGGTCTTTCCTGCAAACTTCTTAGTGGAGATATGCAGCAGATTATTATAAATGGCATTTCAGAGGTTGAATGTAGAAGTCTTCTGGCTGATGCTAAAGCCAAATATGGCGTGAAATCTTCAAGTGGAGGTCGTCGCAGTTCGAAACACAAAACCAATGCTGGACATGGAGATCTTGATATTCCCAATGGTTTCCCCAAATGGAATCCTGGAAAGGAAGATGGCACTATTGCTCCATTGGCACTTATAATTGATGGCAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTTGACCTGGCAACTTCCTGCAAGGTTGTGCTTTGCTGTCGTGTTGCGCCCTTGCAAAAGGCAGGAATTGTTGATCTGATCAAGAGCCGGACAGATGATATGACACTGGCTATAGGCGATGGGGCCAATGACGTGTCAATGATCCAAATGGCAGATGTTGGTGTAGGAATATGTGGGCAGGAAGGGCGCCAAGCAGTGATGGCTTCAGATTTTGCAATGGGACAGTTTCAGTTTTTAAAAAAATTACTTCTGGTTCATGGGCACTGGAATTATCAGCGTGTTGGCTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTGACAGATTGGAGTAGTGTTTTCTATTCTGTGATATACACATCTGTTCCTACTATTATTGTTGGTATTCAGGATAAGGACTTGAGTCACAGGACACTCTTGCAGTTTCCTAAGCTGTATGGTTCAGGTCACAGGCAAGAAGCGTACAATATGCAACTTTTTTGGATCACTATGATTGATACAGTATGGCAGAGCCTTGTTCTTTTCTACATCCCATTGTTCACCTATAAGGACAGTTCAATTGACATATGGAGCATGGGCAGTTTATGGACAATTGCAGTTGTTATCCTTGTAAATGTGCACCTTGGTATGGACATTAACCGTTGGGTATTAATTACTCATGTTGCAATCTGGGGTTCAATAATCATTACGTACGGTTGCATGGTGGTATTGGATTCAATACCTGTCTTTCCCAATTACTGGACTATTTATCATCTGGCAAGTTCCCCTACATATTGGATAACAATTTTGCTTATAATTATTGTGGCATTGCTCCCTCGCTTTATATGTAAAGTTGTCTATCAAATTTTTTGGCCTTCGGACATCCAGATAGCTAGAGAAGCTGATTTAATGAGAAAACGACATGCTACTTTGCGGCCAAGGCTTCAAGTTTCCAGTTAA 3870 0.4326 MSSDETLLLDSDPRPVIVHRRGKSGSRTYLCGHGSFSSSVFEAAIADISDLDVKERNKEVLSGDCSFQTASFSNSNSSDRCAVESKFPWQFPLECSTREKRRSASWGAMELHGADNRSVPFEISGASSHVQDRLNSKSQRIRHRSVQFDDPAFQEDGARLIYINDPRKTNDKYEFTGNEIRTSRYTFVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQSGDFRSKKWKKVQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYARQETASVVTSESCDVFGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLESYMNRETLWLSVFLFIMCLVVAIGMCLWLVRHKNQLDTLPYYRKRYFTNGPDNGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDRDMYDASSGSRFQCRSLNINEDLGQIRYIFSDKTGTLTENKMEFKRASVHGKNYGSSLNVVDNTAVDVTPKRRWKLKSEPVVDSELMMMLRENSNREERVSGHEFFLTLAACNTVIPILGDGGFSRHGTNELKDDIRCIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILESGSESNINILHTTQSHLNEYSSQGLRTLVIGSRDLSDAELEEWQSCYEEASTSLTDRATKLRHTAALIESNLKLLGATGIEDKLQEGVPEAIEALRQAGIKVWVLTGDKQETAISIGLSCKLLSGDMQQIIINGISEVECRSLLADAKAKYGVKSSSGGRRSSKHKTNAGHGDLDIPNGFPKWNPGKEDGTIAPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIIVGIQDKDLSHRTLLQFPKLYGSGHRQEAYNMQLFWITMIDTVWQSLVLFYIPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLGMDINRWVLITHVAIWGSIIITYGCMVVLDSIPVFPNYWTIYHLASSPTYWITILLIIIVALLPRFICKVVYQIFWPSDIQIAREADLMRKRHATLRPRLQVSS* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0630 1289 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 554 829 IPR023299 GO:0000166
Vra4g0630 1289 CDD P-type_ATPase_APLT_Dnf-like 177 1155 - -
Vra4g0630 1289 Gene3D - 653 795 IPR023299 GO:0000166
Vra4g0630 1289 SFLD p-type atpase 532 1046 IPR044492 -
Vra4g0630 1289 Gene3D - 558 572 IPR023299 GO:0000166
Vra4g0630 1289 SUPERFAMILY HAD-like 543 1041 IPR036412 -
Vra4g0630 1289 MobiDBLite consensus disorder prediction 894 919 - -
Vra4g0630 1289 Gene3D - 531 544 - -
Vra4g0630 1289 Pfam Phospholipid-translocating P-type ATPase C-terminal 1023 1263 IPR032630 -
Vra4g0630 1289 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 148 1286 - -
Vra4g0630 1289 Gene3D - 234 404 - -
Vra4g0630 1289 PRINTS P-type cation-transporting ATPase superfamily signature 548 562 - -
Vra4g0630 1289 PRINTS P-type cation-transporting ATPase superfamily signature 995 1014 - -
Vra4g0630 1289 SUPERFAMILY Calcium ATPase, transmembrane domain M 175 1262 IPR023298 -
Vra4g0630 1289 Pfam E1-E2 ATPase 259 506 - -
Vra4g0630 1289 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 175 1270 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra4g0630 1289 SFLD C1.7: P-type atpase like 532 1046 - -
Vra4g0630 1289 Pfam Phospholipid-translocating ATPase N-terminal 161 226 IPR032631 -
Vra4g0630 1289 Pfam Cation transport ATPase (P-type) 663 737 - -
Vra4g0630 1289 Gene3D - 545 557 IPR023214 -
Vra4g0630 1289 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 481 571 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra4g0630 1289 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 965 1081 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra4g0630 1289 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 807 864 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra4g0630 1289 SUPERFAMILY Calcium ATPase, transduction domain A 258 400 IPR008250 -
Vra4g0630 1289 ProSitePatterns E1-E2 ATPases phosphorylation site. 550 556 IPR018303 -
Vra4g0630 1289 Gene3D - 813 1035 IPR023214 -
Vra4g0630 1289 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 148 1286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0630 Vra-Chr4 11790832 11798597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0630 138 1272 Primary Pumps ATPases AT5G04930 56.586 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0630 K14802 - gmx:100789830 2286.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0630 4 11790832 11798597 Vra4g0630 4 11790832 11798597 ECH
Vra4g0630 4 11790832 11798597 Vra9g0660 9 7532592 7538439 PCT