Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0627 ATGGTTTCCTCTCAGTTTTCTGGTTTTACGAAGGGTGGTTATAAACCCTCACACACTCATTTACTCTTTCCTGCAAACCTGCCTGATACTGTGAACACGGAGCATATTGAGCTAGATTTCGCTGATGTATTCGGCCCCGTTACTGTAGATTTGAACAACATTGATTCCACTACTGGTGAACCTGTAGAAGACGTGAATGAGTTGGTTTATGATGACCCACCAGTCATTTACACCCGATCTCATTCTCTGGTTGGCCCTTCTACTTGTGTTAGTCAATCACTTAAGCTTAGCAAACTCACCATACATGAGACTGAGGATTCACTGGAACTAGAGGATTATGTTGATGGAGAGACCTTTAAGGACATCAAAGTATCCTCCTTTGTCGAAGAATCTTTGAAAGACGAAGACGGGAATATCTCGAAAACCCAAAGAGTTAGCATTGAAGATTTTGAGATTTTGAAGGTTGTGGGGCAGGGTGCATTTGCTAAAGTATATCAGGTGAGGAAGAAAGGTACTTCAGAAATATATGCTATGAAGGTTATGCGGAAGGACAAGATTATGGAGAAGAACCATACTGAATACATGAAAGCTGAGAGGGATATCTGGACAAAGATAGAGCACCCTTTTGTTGTTCAACTCAGATACTCTTTTCAGACAAAATACAGACTGTATCTTGTGCTTGATTTTGTAAACGGGGGGCATCTCTTCTTCCAGCTTTATCACCAAGGCCTTTTCAGAGAGGATCTAGCGCGCATATATGCTGCCGAGATTGTTTCAGCAGTTTCTCATCTCCATTCAAATGGAATAATGCACAGGGATCTGAAGCCTGAAAATATTCTACTGGACGCTGATGGCCATGTTATGTTGACTGATTTTGGCTTAGCAAAACAATTTGAAGAGAGTACAAGATCAAATTCGATGTGTGGTACATTAGAGTACATGGCACCTGAAATTATTCTTGGCAAAGGCCATGATAAGGCTGCTGATTGGTGGAGCGTTGGTGTTCTACTGTTTGAGATGCTTACTGGAAAGCCGCCTTTCTGTGGTGGGAGCCCGGACAAAATTCAGCAGAAGATAGTTAAAGACAAGATCAAGCTGCCAGCATTTTTGTCAAGTGAAGCACATTCACTGTTGAAAGCGCTGCTACAGAAGGAAGCAACGAAGCGCTTAGGTTGTGGAGTCCGGGGGGTTGAGGAAATTAAGGGACACAAGTGGTTTAAACAAATCAATTGGAGAAAGCTGGAAGAACGAGAAATCCAGCCAAGCTTTATCCCAGAAGTAGCTGGTACGCACTGTGTTGCCAACTTTGAGAAACGGTGGACTGATATGCCTGTTGTGGACTCGCCAGCTGCCAGCCCAAATGGTGGAAACCCATTTAAGGACTTCTCTTACGTGAGGCCTGCACCCTCTTTTCTTCAGAGGAATAGCCCTGCGTACTAA 1440 0.4347 MVSSQFSGFTKGGYKPSHTHLLFPANLPDTVNTEHIELDFADVFGPVTVDLNNIDSTTGEPVEDVNELVYDDPPVIYTRSHSLVGPSTCVSQSLKLSKLTIHETEDSLELEDYVDGETFKDIKVSSFVEESLKDEDGNISKTQRVSIEDFEILKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHTEYMKAERDIWTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSNGIMHRDLKPENILLDADGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGSPDKIQQKIVKDKIKLPAFLSSEAHSLLKALLQKEATKRLGCGVRGVEEIKGHKWFKQINWRKLEEREIQPSFIPEVAGTHCVANFEKRWTDMPVVDSPAASPNGGNPFKDFSYVRPAPSFLQRNSPAY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0627 479 SMART serkin_6 150 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0627 479 ProSiteProfiles AGC-kinase C-terminal domain profile. 407 474 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra4g0627 479 SUPERFAMILY Protein kinase-like (PK-like) 147 469 IPR011009 -
Vra4g0627 479 Gene3D Phosphorylase Kinase; domain 1 147 447 - -
Vra4g0627 479 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 477 - -
Vra4g0627 479 CDD STKc_AGC 156 406 IPR045270 GO:0004674|GO:0005524
Vra4g0627 479 Gene3D Transferase(Phosphotransferase) domain 1 230 425 - -
Vra4g0627 479 Pfam Protein kinase C terminal domain 429 464 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vra4g0627 479 ProSiteProfiles Protein kinase domain profile. 150 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0627 479 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Vra4g0627 479 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 477 - -
Vra4g0627 479 Pfam Protein kinase domain 150 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0627 479 SMART pkinase_C_6 407 466 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vra4g0627 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0627 Vra-Chr4 11731675 11735627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0627 1 476 AGC Kinase Gene Family AT3G08720 67.010 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vra4g0627 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0627 K04688 - gmx:100804819 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0627 4 11731675 11735627 Vra4g0627 4 11731675 11735627 ECH