Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0626 ATGGCTTCTCTGCTTCCTACAACTGCCACAACACTTCAACATAATCGTACCATCTGCTTCTCTCCTCTCAAACTCAGCATCCCAATTACCATTTCCTTTTCGACAAACCGTTTCAAGAGTGCCTCTCCAAAGTGCAATGCAGTTTTTGGTGATATTCCCAAAGACTTGTTGGAGACCACTTTTCACTTGGACCAGTTTTCTGTCTTCCAATCAGTGTTAGTGAAGTTTCAGCATGTAACTGAAGATTTATCAGACGTGCAGAGGTGGGGGTTTGTGATACTTGCAGGGCTGACATGGACCTATTTAACTGCGAGGCCGGGTGTCCTTGTGGGCGCCATTGATGCATTCCTTTTGGCCCCTATTCAACTGCTTTTGGACACTTTATCTGGAAGAAGAAATCTTAAGAGGACTGATTTTCTTATTGGAGATAAACTTGGAGAAGGGTCTTTTGGTGTTGTTTATTCAGGTTTTTTCATCCCAAACAATGTAGATGCACAAGAGTGGATTCAAAAAAATGGAAGAGGCAAGGTGAAAAAGTTTGATGCCAAATCTAAGGATAAAGTCATTCTTAAAAAGAATGTGCAGGTAAAGGTTGGAATTGAAGGGGCAGAGGAATTTGGTGATTTTGAGGAGTGGTTCAATTACAGACTCTCCAGAGCAGCTCCTGAAACATGTGCTAAGTTTCTTGGAAGTTTTGTAGCTGACAAAACGAATTCACAGTTCACAAAAGGTGGAAAATGGCTAGTTTGGAAGTTTGAGGGAGGGCGCTCTCTTGCTGATTACATGGCTGATCAAAGCTTCCCATCAAACTTAGAGTCTACCATGTTTGGACGTGTCTTGCAGGGTGTAGACTCTTCTAAACGAAATGCATTAATCGTCAAGCAAATAATGCGCCAGATCATTACTTCTCTCAAGAAAATTCACGACACTGGAATTGTTCATAGGGATGTTAAGCCTGCCAACTTGGTAGTTACCAAACGGGGGCAGATTAAACTGATCGATTTTGGTGCTGCAACAGACCTTAGAATTGGAAAGAATTATGTTCCCAATCGTAACCCCTTGGACCGTGACTACTGCCCGCCTGAACTGTATGTTCTACCAGAAGAAACTCTGAGCCTTCCACCAGAGCCAATTGCAGCTTTCCTTTCACCAATCATGTGGCAGTTAAAGAGTCCTGATCTGTTTGATATGTATTNTGCTGGGATTGTATTCCTGCAAATAGCAATTCCAACCTTAAGATCTTCAGTTGCTTTGAAGAATTTCAATTTGGAGATAAGAACTTGTGGATATGATTTGAACAAATGGAGAGNGTCTACTCGCATGAGGTCTGACTTCCAAATTCTTGATAGTGACTCTGGAAGAGGTTGGGACTTGGCAACAAAGCTTATCTCCAAGAGATGTTCACAATTAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGGCATCCTTATTTCCTTCTGGGTGGAGATCAGGCTGCCGCAGTCCTTTCAAAACTAAGCTTTTAA 1506 0.4223 MASLLPTTATTLQHNRTICFSPLKLSIPITISFSTNRFKSASPKCNAVFGDIPKDLLETTFHLDQFSVFQSVLVKFQHVTEDLSDVQRWGFVILAGLTWTYLTARPGVLVGAIDAFLLAPIQLLLDTLSGRRNLKRTDFLIGDKLGEGSFGVVYSGFFIPNNVDAQEWIQKNGRGKVKKFDAKSKDKVILKKNVQVKVGIEGAEEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGGRSLADYMADQSFPSNLESTMFGRVLQGVDSSKRNALIVKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRNPLDRDYCPPELYVLPEETLSLPPEPIAAFLSPIMWQLKSPDLFDMYXAGIVFLQIAIPTLRSSVALKNFNLEIRTCGYDLNKWRXSTRMRSDFQILDSDSGRGWDLATKLISKRCSQLRGRLSAAAALRHPYFLLGGDQAAAVLSKLSF* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0626 501 ProSiteProfiles Protein kinase domain profile. 139 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0626 501 Gene3D Phosphorylase Kinase; domain 1 127 252 - -
Vra4g0626 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Vra4g0626 501 Gene3D Transferase(Phosphotransferase) domain 1 281 487 - -
Vra4g0626 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 501 - -
Vra4g0626 501 Pfam Protein kinase domain 292 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0626 501 SMART serkin_6 139 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0626 501 SUPERFAMILY Protein kinase-like (PK-like) 137 486 IPR011009 -
Vra4g0626 501 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 501 IPR044803 GO:0004674|GO:0009579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0626 Vra-Chr4 11724638 11731023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0626 225 339 MAP Kinase Kinase Gene Family AT4G29810 29.310 1.39e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vra4g0626 Pkinase 4.5e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0626 4 11724638 11731023 Vra4g0626 4 11724638 11731023 ECH
Vra9g0659 9 7528603 7532090 Vra4g0626 4 11724638 11731023 PCT