Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0622 ATGTGGAGCATGGATCGGTACTGTGTTTGTGTTCCATTGTTCGTGTGCTTGGTATTGGCTATGGAGCTTGTTGTAGCGCAGAATTTTAAGCCTACAGATAATATCCTGCTGGATTGTGGAGGTCCTCCATCTAGTACTGATACCGATGGCCGTGAATGGACCACTGATGTTGGTTCCAAGTTTGGTTCCTCTTCGGAAAAATCCACCACCGTATCGNAGGCNGCAACTCAAGANCCTGCCGTCCCCCAGGTGCCCTACATGACAGCACGTGTGTTCCACGCGCCGTTTACCTATGCTTTCCCGGTGGCTTCCGGTTGGAAGTTCCTCCGGCTGCANTTTTACNCGGCTTCTTACTCCAATCTCAATGCATCTGATGCCCTTTTTGCGGTGACGGCGAATTCATACACGCTTCTTAGGAACTTTAGTGTTGCTCAGACCACCCTGGCTTTGAATTATGCCTACATTTTGAAGGAATTTGCCATCCATGTAGATGGGAAGACCTTGAATGTGACTTTCACTCCTTCTACCAANGCATCCAATGCTTACGCGTTTGTTAATGGGATCGAGGTTGTGTCCATGCCTGATATTTATACTTCTACTGATGGAACTACCATGATAGTGGGTACAAATACTGCTTACACTATTGATAACAGCACTGCACTTGAGAATGTTTATAGGTTGAATGTGGGTGGGAATGATATCTCTCCCTCCCNTGATACTGGNATGTTTAGGTCATGGTCTGATGATGTTCCCTTTCTCTTTGGCGCTGCATTTGGAGTTACAGAGCCTGCTGATTCAAATGTGAAGTTTGAGTATCCTCCGGGCACNCCAAGNTATATTGCNCCACTTGATGTCTACACTACGGCCAGATCAATGGGCCCGNATNNGNNGATCAACANGAATTACAACTTGACTTGGATCTTCAACATTGATTCNGGGTTTTCCTATCTAGTGAGACTTCATTTTGCTGAGNNNNGNNNNCNNCNNNNTNNTNNTNNTGGTNCTTCACACTCTGCAGNTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCCCTCCCATCAAACCTTTGTCGGCATTTCTCATTTGCTGAAATCAAGTCTGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTAGGAGGATTCGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTAGCAATTAAACGTGGGAATCCACTATCTGAGCAGGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTNTCTAAACTTCGTCACCGCCACCTTGTTTCTCTNATTGGATACTGTGAAGAAAACACTGAAATGATCCTNGTTTATGATNATATGGCCTATGGAACACTCAGGGAGCATTTGTACAAGACCCAGAAACCTCCACTTCCATGGAANCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATTTACACACTGGTGCTAAACACACAATCATCCACCGTGATGTGAAGACAACAAACATTTTACTGGACGAGAAGTGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACATTGGATAATACCCATGTAAGTACTGTGGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTANTCATTTGGGGTGGTTCTCTTTGAGATATTNTGTGCTCGTCCAGCTTTGAACCCAGCCCTTGCTAAGGAGCAAGTGAGTCTNGCTGAGTGGGCAGCTCATTGCTACCTGAAAGGCATTCTTGANCAAATCATTGATCCATATCTAAAAGGCAAGATAGCTCCAGAATGNTTCAAGAAGTTTGCNGAGACNGCGATGAAGTGCGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGTGCAGAGGAAAGTGGCAACGGCTTTGGCGACATTCACAATGAAGAGGAGCCCACGTATACAGATTCTAAAGGAAAGAAAGACTCTGATGCNATGGGGGGTTATGATGGTAATGTGACTGATTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGGCGTTAA 2199 0.4438 MWSMDRYCVCVPLFVCLVLAMELVVAQNFKPTDNILLDCGGPPSSTDTDGREWTTDVGSKFGSSSEKSTTVSXAATQXPAVPQVPYMTARVFHAPFTYAFPVASGWKFLRLXFYXASYSNLNASDALFAVTANSYTLLRNFSVAQTTLALNYAYILKEFAIHVDGKTLNVTFTPSTXASNAYAFVNGIEVVSMPDIYTSTDGTTMIVGTNTAYTIDNSTALENVYRLNVGGNDISPSXDTGMFRSWSDDVPFLFGAAFGVTEPADSNVKFEYPPGTPXYIAPLDVYTTARSMGPXXXINXNYNLTWIFNIDSGFSYLVRLHFAEXXXXXXXXXGXSHSAXSAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDXMAYGTLREHLYKTQKPPLPWXQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVXSFGVVLFEIXCARPALNPALAKEQVSLAEWAAHCYLKGILXQIIDPYLKGKIAPEXFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGDIHNEEEPTYTDSKGKKDSDAMGGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0622 732 ProSiteProfiles Protein kinase domain profile. 374 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0622 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Vra4g0622 732 Pfam Protein tyrosine and serine/threonine kinase 380 574 IPR001245 GO:0004672|GO:0006468
Vra4g0622 732 PANTHER OS07G0166700 PROTEIN 340 683 IPR045272 GO:0004714|GO:0006468
Vra4g0622 732 PANTHER OS07G0166700 PROTEIN 20 325 IPR045272 GO:0004714|GO:0006468
Vra4g0622 732 Gene3D Phosphorylase Kinase; domain 1 359 449 - -
Vra4g0622 732 Gene3D - 34 194 - -
Vra4g0622 732 Gene3D - 219 336 - -
Vra4g0622 732 SUPERFAMILY Protein kinase-like (PK-like) 348 648 IPR011009 -
Vra4g0622 732 Pfam Malectin-like domain 37 326 IPR024788 -
Vra4g0622 732 MobiDBLite consensus disorder prediction 662 684 - -
Vra4g0622 732 PANTHER - 340 683 - -
Vra4g0622 732 PANTHER - 20 325 - -
Vra4g0622 732 ProSitePatterns Protein kinases ATP-binding region signature. 380 403 IPR017441 GO:0005524
Vra4g0622 732 MobiDBLite consensus disorder prediction 691 725 - -
Vra4g0622 732 Gene3D Transferase(Phosphotransferase) domain 1 451 666 - -
Vra4g0622 732 CDD STKc_IRAK 380 646 - -
Vra4g0622 732 MobiDBLite consensus disorder prediction 658 732 - -
Vra4g0622 732 SMART serkin_6 374 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0622 Vra-Chr4 11696682 11700163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0622 334 732 Receptor kinase-like Gene Family AT3G51550 86.035 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra4g0622 Malectin_like 3e-28 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0622 - - vra:106758358 1399.03