Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0618 ATGATGCTACAGTCCTACCTTTCAACAATTCCAATTTTCCTACTCCTGCTTGTGTTTCTTCAAACCAAAGCTGATCTACACTCAGAAAAGCAAGCTCTTCTTGATTTTGCTGCTGCACTTCATCATGGTCCAAGAGTCAATTGGAACTCTAGTACCTCAATCTGCACTTCATGGGTGGGAGTTACATGTAGTCATGATGGGTCCCATGTACTTTCTGTGAGGCTTCCAGGTGTGGGACTGCGCGGTACTGTCCCACCAAACACACTTGGTAAGCTTAATGGCCTCATTAGTCTCAGTCTTAGGTCCAACAGCTTGAGGGGGAACCTTCCAACTGACCTACTTTCCCTTCCTTCTCTGCGCTTTGTATATCTCCAACACAACAACTTCTCAGGTCATATTCCTGATTCACTGCCACCCCGGCTTATCTTTCTTGATCTGTCCTATAACTCTTTCACAGGTCAAATTCCAGACTCAATCCAAAACTTGACACATCTAATAGGACTCAACCTCCAAAACAACTCTCTCTCAGGATCCATTCCTGATGTTAACCTTCCTACCCTTAAGATTTTGGATTTAAGCTTCAACTACTTGAATGGTTCTATTCCTTCATGTTTCCGTAAGTTTCCTGGCTCCTCATTTAGAGGGAATATGATGTTATGTGGAGCACCTTTGAAACATTGTTCTTCATTTTCCACTTCTACCACATTGTCCCCACCAACAGTCTCTCAAAGACCAAGTGATTCATCAAACAGGAAAATGAACAAGGGGGCAAAAATAGCAATTATTTTTGGGGTTGTCACTTTGCTGTTTGTTCCAGGTCTTATGGTAGTGTTTTGCTGTTTCAAGAAAAAAGTTGGTGAACAAAATGTTGCACCTGCAGAGAAAGGTCAGAAGCTTAAGGAGGACTTTGGTAGTGGTGTGCAAGAACCTGAGAGAAACAAGCTTGTATTCTTTGAAGGTTGTTCTTATAATTTTGATCTGGAAGACTTGTTAAGAGCTTCAGCTGAAGTGCTTGGGAAGGGAAGTTGCGGAACGACATATAAAGCCATCTTGGAGGATGGAACAACAGTGGTTGTGAAGAGGTTAAAAGAGGTGGCAATGGGGAAAAAAGAATTTGAACAGCAAATGGAGATTGTTCAAAGACTTGATCATCACCCAAATGTGATTCCCCTCCGTGCTTATTACTATTCCAAAGATGAAAAACTAATGGTTTACGACTACTCCACAGCCGGAAGTTTTTCCAAGTTACTGCATGGAACCAGGGAAACTGGACGAGCTCCACTAGATTGGGATTCAAGATTGAAGATTGTGGTTGGAGCTGCAAGGGGTGTTTGTCATATTCACTTGGCCAATGGAAGGAAACTTGTCCATGGCAATATAAAATCATCTAATGTGATTCTCACAATAGATCTCCAGGGCTGTATATCAGATTTTGGCCTAACTCCTCTGACAAATTTCTGTGCCTCCTCTAGAAGTCCAGGCTATGGAGCACCTGAAGTTATTGAAACAAGAAAGTCCACCCAAAAATCTGATGTGTACAGCTTTGGTGTTCTCCTTCTTGAGATGCTGACTGGCAAGACACCAGTTCAGTATTCAGGGCATGATGAAGAGGTTGATCTTCCAAAGTGGGTCCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGTTAATGAGGTATCCAAACATTGAAGATGAACTTGTGCAGATGCTGCAACTGGCAATGGCATGTGTAGCAGTGATGCCTGACTCAAGACCCTCAATGGTGGAAGTTGTTAGAACAATAGAAGAAATTAGAGCTTGCATTTATTAA 1824 0.4227 MMLQSYLSTIPIFLLLLVFLQTKADLHSEKQALLDFAAALHHGPRVNWNSSTSICTSWVGVTCSHDGSHVLSVRLPGVGLRGTVPPNTLGKLNGLISLSLRSNSLRGNLPTDLLSLPSLRFVYLQHNNFSGHIPDSLPPRLIFLDLSYNSFTGQIPDSIQNLTHLIGLNLQNNSLSGSIPDVNLPTLKILDLSFNYLNGSIPSCFRKFPGSSFRGNMMLCGAPLKHCSSFSTSTTLSPPTVSQRPSDSSNRKMNKGAKIAIIFGVVTLLFVPGLMVVFCCFKKKVGEQNVAPAEKGQKLKEDFGSGVQEPERNKLVFFEGCSYNFDLEDLLRASAEVLGKGSCGTTYKAILEDGTTVVVKRLKEVAMGKKEFEQQMEIVQRLDHHPNVIPLRAYYYSKDEKLMVYDYSTAGSFSKLLHGTRETGRAPLDWDSRLKIVVGAARGVCHIHLANGRKLVHGNIKSSNVILTIDLQGCISDFGLTPLTNFCASSRSPGYGAPEVIETRKSTQKSDVYSFGVLLLEMLTGKTPVQYSGHDEEVDLPKWVQSVVREEWTAEVFDLELMRYPNIEDELVQMLQLAMACVAVMPDSRPSMVEVVRTIEEIRACIY* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0618 607 Gene3D Transferase(Phosphotransferase) domain 1 409 605 - -
Vra4g0618 607 Pfam Leucine Rich Repeat 187 208 IPR001611 GO:0005515
Vra4g0618 607 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Vra4g0618 607 MobiDBLite consensus disorder prediction 231 252 - -
Vra4g0618 607 ProSiteProfiles Protein kinase domain profile. 332 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0618 607 Gene3D Phosphorylase Kinase; domain 1 299 407 - -
Vra4g0618 607 PANTHER OS05G0588300 PROTEIN 10 604 - -
Vra4g0618 607 Gene3D Ribonuclease Inhibitor 139 229 IPR032675 -
Vra4g0618 607 SUPERFAMILY L domain-like 44 224 - -
Vra4g0618 607 SUPERFAMILY Protein kinase-like (PK-like) 336 599 IPR011009 -
Vra4g0618 607 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Vra4g0618 607 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Vra4g0618 607 Pfam Protein kinase domain 335 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0618 607 PANTHER OS05G0480400 PROTEIN 10 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0618 Vra-Chr4 11650322 11654049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0618 24 603 Receptor kinase-like Gene Family AT5G58300 61.395 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra4g0618 Pkinase 7.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0618 - - var:108321341 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0618 4 11650322 11654049 Vra4g0618 4 11650322 11654049 ECH