Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0612 ATGCCGGCTCTGAGAATTCATGGATATGCCTTGGCTCTTTCGTTTTGTCTTATCACCTTCATAGCAGCATCACAACGAACAGACCCTTCAGAAGTTAATGCGCTGATAGACATCAAGAAAAGTTTGATTGATCCTATGAACAATCTTAAGAACTGGAATAAAGGAGACCCATGTGCAAGAAACTGGACTGGGGTATGGTGTTTTGATAAGACGGGAGATGATGGGTATTTCCATGTTCGTGAGATCTACTTAATGACAACGAATCTCTCGGGAAGTCTATCATCTCAGCTTGGTCAGCTATCCCATCTTGAGATAATGGATTTCATGTGGAACAATCTGACAGGCACGATACCAAAGGAGATTGGAAACATTAAAACATTGAAACTCTTGCTCTTGAATGGCAATATGTTATCTGGGAGTTTACCAGACGAGCTTGGCAACCTTCCATATTTAAATAGATTCCAAGTAGACGAAAACCAATTGTCTGGTTCTATACCAGATTCACTTGCCAACATGACTAGTGTTAAACACCTTCACCTGAACAACAACTCATTTAGTGGTCAACTTCCATCTACACTTTCAAAGTTATCGAATCTGATGCATTTGCTTGTGGACAACAATAACTTATCTGGAAATCTTCCACCAGAATACTCCATGTTAAATGGATTGGCAATACTCCAGCTTGATAACAACAACTTCAGCGGGAATGGAATTCCTTCTACCTATGCAAACTTAACCAGGCTAGTGAAATTAAGTCTAAGAAACTGCAGTCTGCAAGGAGCTATTCCTGATTTCAGTTCAATACCCAAGCTTACCTATTTAGATCTTAGCTGGAATCAGTTGACTGGACCCTTACCATCAAATAAGCTGGCAGACAATATGACAACTATAGATCTGTCCAATAATCTTCTCAACGGATCTATTCCTCGAAGCTACTCTTATCCTCATCTTCAAAAATTGTCACTTGCGAATAATTTACTGTCGGGTTCCATCCCTGCTAGCATATGGCAGAATATGTCCTTCAATGTGAAAGATAAACTTACAATTGATCTCCGTAACAACTCATTTGAGGATGTTTCGGGAAATCTGAACCCCCCGGCAAATGTTACCTTGAGGCTTTCTGGTAATCCTATATGCAAGAACTCCAACGCACAAAGTGCTAGTAAATATTGTGGACCTGAAGAAGATAAGGCAGTTCAAGACTTAACAAGCTCTACCGTTTGTCATGTTCAATCTTGTCCATTTGATGACTTTTATGAATACGCCCCTAATTCCCCAGTTCCTTGCTATTGTGCTGCACCTCTGAGAATTGGATACAGGCTGAAAAGTCCAAGTTTTTCCTACTTTGCTCCCTATAGATCTAGTTTTGAACACTACATAACTGACTCCTTAAAACTACACCTCTACCAACTATCGGTAGATTCTGTAGCTTGGGAAGAGGGACCTCGTCTTAGAATGTATTTGAAACTCTTCCCTTCCTATAACGATTCCCGTTTGAATGTGTTCAACGTAAGTGAGGTTCGTCGGATTAGTGGCCTATTCACATCATGGCGATTTCCTCGCACTGATTTTTTCGGACCATATGAACTCCTGAACTTCACTCTTCGTGGACCTTATGAAAATTTAATTATTGATTCGGAGAAGGGAAAAGTTAGTGTTGGCATAAAAGTTTCTGTTGCAATAGCAGCTGCTGCTTGTGCTTTAGCAATATCTGCAATAATCATTCTCCTGATTACTAGAAGAAAGATGAAATACCAGAAGAAGATTTCCAGGAAATCTACTACTAATATATCCATCAAAATAGATGGCATGAAAGCATTTACTTACAAAGAACTGGCTCTTGCTACAAACAAATTCGATATCTCAACTAAAGTCGGTCAAGGAGGTTATGGGAATGTCTATAAAGGCATTTTATCTGATGAAAATTTTGTGGCAGTTAAGCGAGCAGAAGCAGGTTCCTTACAAGGACAAAGGGAGTTCTTGACAGAGATTGAGCTTCTGTCAAGGTTACACCATCGAAATCTTGTCTCACTGATTGGATACTGCAATGAAGAAGGGGAACAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGACTGGATTTCTGGAAGAAGTAGAAAAACGAAGGGGAGCCTAAATTTTAGTACGAGGTTGAGAATTGCAATGGGAGCAGCCAAAGGCATACTGTATCTTCATACAGAGGCTAACCCTCCTATATTCCACAGAGATATTAAAGCCAGTAACATTCTTCTGGACTCCAAGTTTACAGCTAAAGTGGCCGATTTTGGACTCTCACGGCTTGTACCAGACTTAGATGAAGAAGGAACTGCTCCTAAATATGTGTCAACAGTTGTGAGAGGAACTCCAGGTTACCTGGACCCAGAATATTTATTGACTCATAAGCTGACAGACAAATGTGATGTCTATAGCCTGGGAATTGTGTATCTAGAGCTTTTAACAGGCATGCAACCAATATCTCATGGAAAAAACATTGTTCGCGAGGTTAACATGGCTCATCAATCTGGCACAGTATATTCCATCATAGACAGCAGAATTGGATTATATACATCTGAATGCTTGGAAAAATTCTTAACTCTGGCCCTCAGTTGTTGCCAAGACAATCCAGAGGAGAGACCATCAATGATAGATGTGGTGAGGACACTGGAAGATATCATTGCAATGTTGCCTGAAGCTGAAACTGTTTTCTCAGATGTTAGCTTAGACAGTTCTGGCAACATAGCACCACCCTCATCATCAGCATCAATATCAGCATCCCATGTAGCAAGGGAGGAGCAACACATGTCCTCATATGTGTCTGGAAGCAATCTTGTCAGTGATGTCATTCCCACCATTGTTCCTCGCTGA 2874 0.4068 MPALRIHGYALALSFCLITFIAASQRTDPSEVNALIDIKKSLIDPMNNLKNWNKGDPCARNWTGVWCFDKTGDDGYFHVREIYLMTTNLSGSLSSQLGQLSHLEIMDFMWNNLTGTIPKEIGNIKTLKLLLLNGNMLSGSLPDELGNLPYLNRFQVDENQLSGSIPDSLANMTSVKHLHLNNNSFSGQLPSTLSKLSNLMHLLVDNNNLSGNLPPEYSMLNGLAILQLDNNNFSGNGIPSTYANLTRLVKLSLRNCSLQGAIPDFSSIPKLTYLDLSWNQLTGPLPSNKLADNMTTIDLSNNLLNGSIPRSYSYPHLQKLSLANNLLSGSIPASIWQNMSFNVKDKLTIDLRNNSFEDVSGNLNPPANVTLRLSGNPICKNSNAQSASKYCGPEEDKAVQDLTSSTVCHVQSCPFDDFYEYAPNSPVPCYCAAPLRIGYRLKSPSFSYFAPYRSSFEHYITDSLKLHLYQLSVDSVAWEEGPRLRMYLKLFPSYNDSRLNVFNVSEVRRISGLFTSWRFPRTDFFGPYELLNFTLRGPYENLIIDSEKGKVSVGIKVSVAIAAAACALAISAIIILLITRRKMKYQKKISRKSTTNISIKIDGMKAFTYKELALATNKFDISTKVGQGGYGNVYKGILSDENFVAVKRAEAGSLQGQREFLTEIELLSRLHHRNLVSLIGYCNEEGEQMLVYEFMPNGTLRDWISGRSRKTKGSLNFSTRLRIAMGAAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLVPDLDEEGTAPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVYLELLTGMQPISHGKNIVREVNMAHQSGTVYSIIDSRIGLYTSECLEKFLTLALSCCQDNPEERPSMIDVVRTLEDIIAMLPEAETVFSDVSLDSSGNIAPPSSSASISASHVAREEQHMSSYVSGSNLVSDVIPTIVPR* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0612 957 Gene3D Transferase(Phosphotransferase) domain 1 695 906 - -
Vra4g0612 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Vra4g0612 957 Gene3D Ribonuclease Inhibitor 293 400 IPR032675 -
Vra4g0612 957 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Vra4g0612 957 Gene3D Ribonuclease Inhibitor 190 292 IPR032675 -
Vra4g0612 957 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vra4g0612 957 SUPERFAMILY L domain-like 43 385 - -
Vra4g0612 957 Gene3D Phosphorylase Kinase; domain 1 579 694 - -
Vra4g0612 957 SUPERFAMILY Protein kinase-like (PK-like) 604 914 IPR011009 -
Vra4g0612 957 SMART serkin_6 619 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0612 957 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 926 - -
Vra4g0612 957 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 926 - -
Vra4g0612 957 Pfam Protein kinase domain 621 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0612 957 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Vra4g0612 957 ProSiteProfiles Protein kinase domain profile. 619 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0612 957 CDD STKc_IRAK 625 894 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0612 Vra-Chr4 11558497 11567695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0612 5 903 Receptor kinase-like Gene Family AT5G01950 60.000 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra4g0612 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0612 - - gmx:100815005 1590.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0612 4 11558497 11567695 Vra4g0612 4 11558497 11567695 ECH