Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0606 ATGGAACCCAACAACGCAGACGCTTTCCGACCTTCTTCTTCACCCTCGTCTTCCCCCAGCTCCAGGAGAATTTCCGGGATTTTGTCGCCCACAAATATCATTCAGGCTCCCTTATCGGCGCTATTGGAATATTCCGGCATCCTTCCGTCCCGCTCGTCTAACCACCACAGCCATCCAGCCCCTGACGCAGTTAACAATGACGGTGAGGTTTCGATTAGGATCATCGGTCCCGCGGAGCAGGAGCAGCAACCCCGGGAGGAACAGCATAGCCCTTCTGTCGCTTCGGGATTGGTCGTGGGACTCGCGCATTCGCAAAACGATGCCGTGTTGCCCTCCTCGTCGCCTCGCAGCGATGCTGCTGAGGAAAGCACCGGCCCTGGAGGGGACGGCGTTGGGAGAGACTCTTCTTACCAGAGATACGACATTCAGCATGCTGCCAGGTGGATTGAGCAGGTCTTGCCGTTTTCGTTGCTTCTCTTGGTTGTTTTCATAAGGCAGCATTTGCAAGGGTTTTTCGTGACAATTTGGATTGCGGCTGTGCTTTTCAAGTCGAATGATATTATGAGGAAACAGACTGCGTTGAAGGGAGAGAGGAAAATACCGGTTTTGATTGGGATTTCTGTTGGGTTCGCGCTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTCATGTATCCCCTGATCATGCTTCCTCCCAAGGAAATACCGCCTTTCTGGCATGCCATTTTCATCATCATGGTCAATGATACTTTGGTCCGCCAAGCTGCAATGGTAGTCAAGTGTATGTTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTAGTTGAATATCTCCTTCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCGTCACTGATGACAGGATTGTATCTAACATTTAAACTCACGTCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCAATAAAGGCATTGTCACGTAAAGAAATGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGTGATCTATGTGCTATTTGTCAGGAGAAGATGCATGCCCCAATCTTACTACGTTGTAAACATATTTTCTGTGAAGACTGCGTATCAGAGTGGTTTGAGAGAGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACCTTAGGTCATTTGGAGATGGCTCTACTAGCTTGTTTTTCCAGTTATTCTGA 1296 0.4792 MEPNNADAFRPSSSPSSSPSSRRISGILSPTNIIQAPLSALLEYSGILPSRSSNHHSHPAPDAVNNDGEVSIRIIGPAEQEQQPREEQHSPSVASGLVVGLAHSQNDAVLPSSSPRSDAAEESTGPGGDGVGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDIMRKQTALKGERKIPVLIGISVGFALHVVGVYWWYQNDDLMYPLIMLPPKEIPPFWHAIFIIMVNDTLVRQAAMVVKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAIKALSRKEMHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0606 431 MobiDBLite consensus disorder prediction 108 135 - -
Vra4g0606 431 ProSiteProfiles Zinc finger RING-type profile. 370 408 IPR001841 -
Vra4g0606 431 Pfam Zinc finger, C3HC4 type (RING finger) 368 411 - -
Vra4g0606 431 SUPERFAMILY RING/U-box 362 413 - -
Vra4g0606 431 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Vra4g0606 431 SMART ring_2 370 407 IPR001841 -
Vra4g0606 431 MobiDBLite consensus disorder prediction 7 28 - -
Vra4g0606 431 MobiDBLite consensus disorder prediction 1 28 - -
Vra4g0606 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 418 IPR013083 -
Vra4g0606 431 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 3 431 IPR044235 GO:0061630|GO:1904294
Vra4g0606 431 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 431 - -
Vra4g0606 431 CDD RING-HC_RNFT1_like 369 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0606 Vra-Chr4 11479835 11483977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0606 11 431 C3H Transcription Factor Family AT5G01960 72.454 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0606 - K22379 gmx:100818546 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0606 4 11479835 11483977 Vra4g0606 4 11479835 11483977 ECH