Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0603 ATGGCTGCAAATTCTGGGAACATGTCATTTGCATCGTCTCAATCTGGTTCACAGGCCCATGGGGATACTGATGCTGTCCACGTTGCAGTGTGTTCCCTTTGTGAAAAGGCCCTGTCACATGATAATGAGATGGCAAGTGATCTTGCTAGCCATGGTGTGTGCGGCGATTGTAAATTTTTGTTACTTGAAGACTTTGGGAATCATACATTTACCCAAAGTTCACGAAGGAGGCTTAGAGGAAGATTCAGGCACAACAGTTCTGAATCCGTGGATAATAGTTTCTCACAGCAGATCCCTCATGTGCATAGTATGGTGAGACGATATGAATCACTTGCCTCTGGGGAGGATGATCAACTTGTGGATGGTGACACCCCTGCTTGGTCAATGCAATATGTTAGTACACACACTACCCCAAGTGGGTCTAGAAGGTGGAGGCATGTTCTGTCTGACACTGACAGTGATGGTTTTGATAATTGGACTTCTCTTTATGGTGAAAATGAATCAATTGTGAGTTTTAGACGGTATAGGGTTCCCCATGATGATGAGATAGAGTCTTTCTCTGCTTATGGAGGCGACTCAGATATTTCTATGGATACTCATAGTTTTGTTGGCACTGGAGTCTTTAATTTACCAGATGAGGGAGATGAGTTCGATAGTGACACTGACATTGATCCAATGCATGCTGGCCATGGCCAATGGATTTCAGATGAAGATGATGAAGAAGAGGATGCAGATGGGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGATGATGATGATGATAATGATGATGATGAAGAGGAGGAGGATAGGGAATGGGAATTAGCTGAGGCTGAGGAATCTGAAGCCACAGCCCGCCTTCAATTTTTTTTCTCCTCAAGTCCAAGTGAGAGCAGAGATCCCAACAATTGGGAACAGAGGTTTAATTCTACTGAATCTGAGGGAATGTTTAACCATATAATCAGGGATACTTGGCAAGCTTTTGAGGATGTTGATTTACCTCATGGAGCAAACTTTGGGGATTATCTTGATGCTAGACGTTTCGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCTCCTCCCGCGGCCGTGTCTTTCACGAAAAATTTGCCACGTGTAGTCATTGGCAAAGAACATGAGAAGCATGATGAACTAGTTTGTGCCATTTGCAAAGATGTCCTGGCACCTGGCACTGAAGTAAATCAACTTCCTTGTTCTCACCTTTATCACATTGATTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTATGAAGAAGGAAAGCAGAACATTGATGGTAGAAATGTGATCCATGAGAGGCAGCAAATGGATGTAATAGATGACAGTTCCTCTGATGTTTCTGATGGAGATGAGTTGAATGAAGAGAATGGTAGTAGTCAAGATGTTAGCTCAGGTTCTACCGCAAATTCTTCTACAAGAAGTGGTAGAGGAAGATGGCTTTTTCTTGCTGCAGCTCCAATTGTTAGTTTAGTGGGCATTGTTCTTGTATTTTGGTTAGGCAATAACTCTGAAATTGAGGGAAATAGACATCTGGGCAGTCATTACTTATCCGGGCAAAATCAACATGTTTATGCATCTCCAAACCAGAGGGACAGTAGAAGCAGAAGATGGTGGTGCCCATTTTAA 1710 0.4333 MAANSGNMSFASSQSGSQAHGDTDAVHVAVCSLCEKALSHDNEMASDLASHGVCGDCKFLLLEDFGNHTFTQSSRRRLRGRFRHNSSESVDNSFSQQIPHVHSMVRRYESLASGEDDQLVDGDTPAWSMQYVSTHTTPSGSRRWRHVLSDTDSDGFDNWTSLYGENESIVSFRRYRVPHDDEIESFSAYGGDSDISMDTHSFVGTGVFNLPDEGDEFDSDTDIDPMHAGHGQWISDEDDEEEDADGEEEEEEEEEEEDDDDDNDDDEEEEDREWELAEAEESEATARLQFFFSSSPSESRDPNNWEQRFNSTESEGMFNHIIRDTWQAFEDVDLPHGANFGDYLDARRFEDLLEHLAENDNSRRGAPPAAVSFTKNLPRVVIGKEHEKHDELVCAICKDVLAPGTEVNQLPCSHLYHIDCILPWLSARNSCPLCRYELPTDDKDYEEGKQNIDGRNVIHERQQMDVIDDSSSDVSDGDELNEENGSSQDVSSGSTANSSTRSGRGRWLFLAAAPIVSLVGIVLVFWLGNNSEIEGNRHLGSHYLSGQNQHVYASPNQRDSRSRRWWCPF* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0603 569 MobiDBLite consensus disorder prediction 484 501 - -
Vra4g0603 569 MobiDBLite consensus disorder prediction 1 20 - -
Vra4g0603 569 ProSiteProfiles Zinc finger RING-type profile. 394 435 IPR001841 -
Vra4g0603 569 MobiDBLite consensus disorder prediction 210 283 - -
Vra4g0603 569 PANTHER OS06G0101300 PROTEIN 334 511 - -
Vra4g0603 569 SUPERFAMILY RING/U-box 384 441 - -
Vra4g0603 569 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 334 511 - -
Vra4g0603 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 441 IPR013083 -
Vra4g0603 569 MobiDBLite consensus disorder prediction 235 278 - -
Vra4g0603 569 Pfam Ring finger domain 394 435 IPR001841 -
Vra4g0603 569 Coils Coil 234 257 - -
Vra4g0603 569 MobiDBLite consensus disorder prediction 460 501 - -
Vra4g0603 569 SMART ring_2 394 434 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0603 Vra-Chr4 11449217 11452478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0603 13 569 C3H Transcription Factor Family AT5G01980 42.241 1.88e-116 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0603 - - pvu:PHAVU_008G078700g 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0603 4 11449217 11452478 Vra4g0603 4 11449217 11452478 ECH