LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra4g0593	ATGCCTTCCAATAACCTCGTCTTTCTTATCTTTGTTATTACCTTGTTGAACTTCCCAACCACTAAAGCACAGAACGAGGACAGGGTTTATTTTGAGTACCAAAACTGCAGTGCAAACAGAACATCTTCTAGAAGCATCTATGAGAAGAACTTGATAACCCTTTTCTCTTCCTTCACTTCCAACGCATCTGCTACGTTATTCTACAACACCACGATCCTCAGCAGAAACAACACGGTGTATGGTTTGTTCATGTGTAGGGGTGACATACCCTTACGCCTGTGCAAACAATGCGTGGCCAACGCAACCGAGAAGTTATCTACAGACCCAGATTGTAACAACTCCGTAGAGGCTGTGATGTGGTACGCTGAATGCAAGCTTCGGTATTCCAATGTGTCGTTCTTCTCCGTCGTGGCCACGTCTCCAGAACATATTCTTGTCAGCACTAGCGATGTCTCCACCAACTCCACAATCAGCTTCATGAACTTCTTGCACAACGCAATGAACCGAACTGCAGAAGCAGCAGCAGTTTCGGATGCGAGGTTCTCGACAAAGGAAACGAACTTGTCTCATTCTGAGACCGTTTACAGTCTCGCTCAGTGTACCCAGGATTTGTCACCGGAAAACTGCAGAACTTGTCTTTCAGAAGCAATAGATGAGCTTCCAACATGCTGTGATGGAAAACAAGGAGGGAGAGTTGTGTTTCCGAGTTGTAACATTTGGTATGAGATGTACCCTTTCTATGGCCTCGTCACTGATAATCCACCAGAAAGACTCGCTCCATCATCAGTTGGACTTGAAAGTTTCACTGTAGAGTCCTTGCAATTCAAGTTGTCAATAATTGAAGTAGCAACAAACAACTTTTCAGATGACAATAAGATAGGAAAAGGAGGATTTGGAGAAGTTTACAAGGGTATTCTTATTGATGGAACAACTATAGCGGTAAAAAGACTTTCAAAAAATTCTAAGCAAGGTTTAGCGGAGTTTAAAAATGAGGTTATGTTGATTGCCAAATTCCAACATAGAAATTTAGTAACTTTCAAAGGATTTTGTCTTGATGAGGAAGAGAAGATACTTATCTATGAATATGTGCCCAACAAGAGTTTGGACTACTTCTTATTTGATACTAAACAAGAAAGATTTTTGTCCTGGTATGAGCGTTACAAAATAATAGAAGGGATTGCTAGAGGAATTCTATATTTACACGATCATTCTCGACTTAAAGTTATACATCGTGATCTCAAACCTAGTAATGTACTATTAGATGAAAATATGAATCCAAAAATTTCAGATTTTGGCCTTGCTAGAATTGTTGAAAATGATCAACAAGAAGGAAGTACAAAGAGAATTATTGGAACATATGGTTATATGTCTCCAGAGTATGCAATGTTTGGCAAATTTTCTGAGAAATCAGATGTTTACAGTTTTGGAGTTATGATTCTCGAAATCGTTAGTGGAAAAAAGAACATAGGTTCATATGAACCACATCGTATTGTTAATTGTCTTTTAAATTTTGTATGGGAGCATTGGAGGGATGAAACACCACTGAGTGCACTAGATCCAAAATTAAAAGAAAATCATTCTAATATTGAAGTCATTAGGTGTGTTAAGATTGGTTTATTATGCGTTCAAGAAAATCCAGATGCTAGACCTACAATGTTAACAATTGTCTCATATCTCAATGGTCACTTGGTTGAATTACCTTTTCCCCTAGAACCAACATTTTCTTTGAATCGAGGAACAAATCCAATTGTTGGGCACAACCTAAGTTTGAGACAATCCATCAACAATTCCATACCAGCCTCAATCAATGAGATGTCTATAAGTAAATTTTATCCTCGATAG	1842	0.3849	MPSNNLVFLIFVITLLNFPTTKAQNEDRVYFEYQNCSANRTSSRSIYEKNLITLFSSFTSNASATLFYNTTILSRNNTVYGLFMCRGDIPLRLCKQCVANATEKLSTDPDCNNSVEAVMWYAECKLRYSNVSFFSVVATSPEHILVSTSDVSTNSTISFMNFLHNAMNRTAEAAAVSDARFSTKETNLSHSETVYSLAQCTQDLSPENCRTCLSEAIDELPTCCDGKQGGRVVFPSCNIWYEMYPFYGLVTDNPPERLAPSSVGLESFTVESLQFKLSIIEVATNNFSDDNKIGKGGFGEVYKGILIDGTTIAVKRLSKNSKQGLAEFKNEVMLIAKFQHRNLVTFKGFCLDEEEKILIYEYVPNKSLDYFLFDTKQERFLSWYERYKIIEGIARGILYLHDHSRLKVIHRDLKPSNVLLDENMNPKISDFGLARIVENDQQEGSTKRIIGTYGYMSPEYAMFGKFSEKSDVYSFGVMILEIVSGKKNIGSYEPHRIVNCLLNFVWEHWRDETPLSALDPKLKENHSNIEVIRCVKIGLLCVQENPDARPTMLTIVSYLNGHLVELPFPLEPTFSLNRGTNPIVGHNLSLRQSINNSIPASINEMSISKFYPR*	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra4g0593	613	SMART	serkin_6	287	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra4g0593	613	SUPERFAMILY	Protein kinase-like (PK-like)	269	579	IPR011009	-
	Vra4g0593	613	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	264	603	-	-
	Vra4g0593	613	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	19	250	-	-
	Vra4g0593	613	Pfam	Salt stress response/antifungal	36	130	IPR002902	-
	Vra4g0593	613	Pfam	Salt stress response/antifungal	155	243	IPR002902	-
	Vra4g0593	613	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	264	603	-	-
	Vra4g0593	613	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	19	250	-	-
	Vra4g0593	613	ProSiteProfiles	Gnk2-homologous domain profile.	29	133	IPR002902	-
	Vra4g0593	613	CDD	STKc_IRAK	293	561	-	-
	Vra4g0593	613	Pfam	Protein tyrosine and serine/threonine kinase	290	558	IPR001245	GO:0004672\|GO:0006468
	Vra4g0593	613	Gene3D	-	142	246	IPR038408	-
	Vra4g0593	613	Gene3D	-	28	133	IPR038408	-
	Vra4g0593	613	Gene3D	Phosphorylase Kinase; domain 1	256	362	-	-
	Vra4g0593	613	Gene3D	Transferase(Phosphotransferase) domain 1	363	565	-	-
	Vra4g0593	613	ProSiteProfiles	Gnk2-homologous domain profile.	139	246	IPR002902	-
	Vra4g0593	613	ProSiteProfiles	Protein kinase domain profile.	287	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra4g0593	613	ProSitePatterns	Protein kinases ATP-binding region signature.	293	315	IPR017441	GO:0005524
	Vra4g0593	613	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	408	420	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra4g0593	Vra-Chr4	11338083	11345224	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra4g0593	6	613	Receptor kinase-like Gene Family	AT4G11490	39.602	9.33e-149	442

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vra4g0593		PK_Tyr_Ser-Thr	1.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra4g0593	-		-	gmx:102661673	862.448