Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0591 ATGGGTAGTAGCTGCCCTTGTTTCGGGTCGAGGAAGAAGGGTAAAGAGAAGAGTGTCAAGAGGCGGGATGAGGAAAACAAGAATCTCAAATCTGTAAAGAACACCAATGATGTCTCTGAAAGTTCTCCAGGGAATGGACCAGAGGAAAACCCAGTAGAGGAGGGCGAAAGTTCTCATAAGGCCCGGATATTTACCTTCCGAGAGCTTGCAACAGCAACAAAAAGTTTTAGAGATGAAACCTTTATTGGACAAGGTGGATTTGGCATTGTTTACAAGGGAATAATTCGGGAAAATCAGGTTGTAGCTGTTAAAAGACTTGATACTACAGGTGTTCAAGGGGAGAAAGAATTTCTGGTGGAAGTTCTCATGCTTTCCCTTCTACGCCATCCCAACCTTGTTAGCATGATTGGGTACTGTGCGGAAGGAGATCAACGTCTTCTTGTGTATGAGTACATGGCTTTGGGATCCCTAGAATCTCATCTTCATGATGTTTCTCCTGATGAAGAGCCACTTGATTGGAATACCAGAATGATTATAGCTTGTGGATCAGCAAAAGGGCTACATTATCTCCACGACGAAGCAAAGCCTTCAGTTATATACAGGGATCTTAAAGCATCCAATATACTATTGGATGAAGATTTCCATCCAAAACTTTCTGATTTCGGGCTCGCAAAATTTGGTCCAACCGGAGATCAATCATATGTTGCCACAAGGGTCATGGGAACACAAGGTTACTGTGCCCCTGAATATGCCACTAGTGGAAAATTAACGAAGAGATCTGACATATACAGTTTTGGGGTTGTGTTACTGGAACTAATTACTGGACGCAAAGCATATGATGATAAGCGTGGCCCTGAAAAGCTTCTGGTAGACTGGGCACGTCCAATGCTGAGAGACAAAAGGAGTTTCCCAAGATTGGTAGATCCAGGGCTTAAAGGGAAGTACCCAGGATCATGTCTAGCGATGGTGATTGAATTGACAGCCATGTGTCTTCGTGAAGAGCCACGTCAACGGCCTAATGCAGGTGATATAGTGGCAGCTCTGGAATTCTTGTCATCCAAGCAATATTCCCCAAAAGTGTTGAACACAGTCAACAACAGAACTGAGATGGAGAGTGGAGAGACCCCAAATGAAACAAGAGCCATTTTGCCAAAAGAATCAGTGAGAGAGCGAGCTGTTGCAGAAGCCAAGCTTTGGGGGGAGACATGGAGGCAGAGACGACAAAGTGAGCAAAACAGTCCTAAGGAACCCCACATAGGGTTGTGA 1266 0.4463 MGSSCPCFGSRKKGKEKSVKRRDEENKNLKSVKNTNDVSESSPGNGPEENPVEEGESSHKARIFTFRELATATKSFRDETFIGQGGFGIVYKGIIRENQVVAVKRLDTTGVQGEKEFLVEVLMLSLLRHPNLVSMIGYCAEGDQRLLVYEYMALGSLESHLHDVSPDEEPLDWNTRMIIACGSAKGLHYLHDEAKPSVIYRDLKASNILLDEDFHPKLSDFGLAKFGPTGDQSYVATRVMGTQGYCAPEYATSGKLTKRSDIYSFGVVLLELITGRKAYDDKRGPEKLLVDWARPMLRDKRSFPRLVDPGLKGKYPGSCLAMVIELTAMCLREEPRQRPNAGDIVAALEFLSSKQYSPKVLNTVNNRTEMESGETPNETRAILPKESVRERAVAEAKLWGETWRQRRQSEQNSPKEPHIGL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0591 421 ProSiteProfiles Protein kinase domain profile. 76 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0591 421 SUPERFAMILY Protein kinase-like (PK-like) 55 351 IPR011009 -
Vra4g0591 421 MobiDBLite consensus disorder prediction 32 46 - -
Vra4g0591 421 CDD STKc_IRAK 82 349 - -
Vra4g0591 421 Pfam Protein kinase domain 77 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0591 421 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Vra4g0591 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vra4g0591 421 SMART serkin_6 76 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g0591 421 PANTHER OS07G0668900 PROTEIN 7 369 - -
Vra4g0591 421 PANTHER OS07G0668900 PROTEIN 7 369 - -
Vra4g0591 421 Gene3D Transferase(Phosphotransferase) domain 1 152 373 - -
Vra4g0591 421 MobiDBLite consensus disorder prediction 10 31 - -
Vra4g0591 421 MobiDBLite consensus disorder prediction 400 421 - -
Vra4g0591 421 MobiDBLite consensus disorder prediction 1 59 - -
Vra4g0591 421 Gene3D Phosphorylase Kinase; domain 1 48 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0591 Vra-Chr4 11283813 11287274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0591 4 404 Glycoside Hydrolase AT3G07070 51.825 3.23e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra4g0591 Pkinase 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0591 K13430 - gmx:100809298 645.966