Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0589 ATGGAAGTGTTAGTCCCACTTGGAGGCAAGACCTATAAGCTCCCTGTTGGCTACTTGTTCGACCCCACCGATGAAATTCTTGCAGGCTACTACCTCAGGAAGAGGATCATGGCACAAACACTCCCCAATGACCTCATCCAAGACTATCATGTTTTCCAGACTCAGCCTTGGGACCTCCCAGGAGGTGGGAAGTACATGAATTGGCAGAAGTTTTTCTTCTACGATGTGAGGAGCCGTGTGTCAGGAAACCCTGACAAGAGCGATGCTGGGAAAGGGCAATGGGAAATGGTGGAGAAAGATGAAGAGGTTGAGTTATCTGACGAAAAAGTGATTGGAAAGAAGAGTGTTCTGGTTTTCTGGAAAGCCAAGGGTAGCTCTCTTGCCAAAACAAAATGGGTGATGCATGAGTTTCGTCTTGCCCTAAAGTCAAATCCATCAAAGATGTCAGCCTTGGCTGTGTGCCGCATATTCGAGAGGAAAACTTCAAAGAGGGCAACAAAGAAAGCAAGAGTGTCAAACAGGAGCAATATTGAAGAAGCTATGGATGTCATTGATTTCACAGTGGAGTGTGGTGGCACTGAGACTGGTCCTCCCTCTCCTGGGACCCCCTAG 612 0.4771 MEVLVPLGGKTYKLPVGYLFDPTDEILAGYYLRKRIMAQTLPNDLIQDYHVFQTQPWDLPGGGKYMNWQKFFFYDVRSRVSGNPDKSDAGKGQWEMVEKDEEVELSDEKVIGKKSVLVFWKAKGSSLAKTKWVMHEFRLALKSNPSKMSALAVCRIFERKTSKRATKKARVSNRSNIEEAMDVIDFTVECGGTETGPPSPGTP* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0589 203 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Vra4g0589 203 PANTHER NAC DOMAIN-CONTAINING PROTEIN 68 12 174 - -
Vra4g0589 203 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vra4g0589 203 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Vra4g0589 203 PANTHER NAC TRANSCRIPTION FACTOR 56 12 174 - -
Vra4g0589 203 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0589 Vra-Chr4 11237093 11238179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0589 14 170 NAC Transcription Factor Family AT2G18060 35.185 5.43e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra4g0589 NAM 4.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0589 - - gmx:100305869 238.039