Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0584 ATGGCAGACCCAACAGCCATGTATGACTTCCTGAAGCACCCAACAAACGGTGGTGTAAAGAGACCACTACCACCACCTTCCACCACTGCCAACACTACCACCACCACCACCACCACCACCACCACCACTGCAGCCACCGCACGCACCTTCCAATGCCATTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCACACAAGCTGGAGCGAGCAGCCGCGAGGAGACAAACCAACGGGCTTCTCCCGCCGCCCCCGCTGCCGCTGGAGCCTTCCCTCAAGCAAAGCGAGCCCAGGCCCAGGCCCATGCTGGAGCCACTGGAGCCCTCCACCGGGCTCTTCTTCCATCCTCCCTACTGGCTGGATGTGGAGCCCCTGCAGTTCCAAAGCACCCACCCTTACGTGACCGCCGCTACCCTCCCCGTTCCTTTCCACGCCGCGTCTTCCACCGTACCCCAACAACAACAACAACAAGTCCTTTCCCACAATGTGGACGGTTCCGACCACGTGAACCTGGACCTGACTCTCCGCTTGTGA 552 0.6105 MADPTAMYDFLKHPTNGGVKRPLPPPSTTANTTTTTTTTTTTTAATARTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPSLKQSEPRPRPMLEPLEPSTGLFFHPPYWLDVEPLQFQSTHPYVTAATLPVPFHAASSTVPQQQQQQVLSHNVDGSDHVNLDLTLRL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0584 183 MobiDBLite consensus disorder prediction 1 40 - -
Vra4g0584 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Vra4g0584 183 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Vra4g0584 183 MobiDBLite consensus disorder prediction 25 40 - -
Vra4g0584 183 MobiDBLite consensus disorder prediction 83 109 - -
Vra4g0584 183 Gene3D Classic Zinc Finger 27 87 - -
Vra4g0584 183 PANTHER ZINC FINGER PROTEIN JAGGED 36 183 IPR045320 GO:0003700
Vra4g0584 183 MobiDBLite consensus disorder prediction 86 100 - -
Vra4g0584 183 PANTHER OS02G0182300 PROTEIN 36 183 - -
Vra4g0584 183 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0584 Vra-Chr4 11127305 11128040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0584 26 92 C2H2 Transcription Factor Family AT5G14010 50.746 4.30e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g0584 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0584 - - vra:106758350 318.161