Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0577 ATGTTGCCCTGCGATTACTGTCACACCAAACCCGCCTTACTCTTCTGCCGACCCGACTCTGCCAAACTCTGTCTCCTCTGCGACCACCACGTCCACACCGCTAACGCTCTCTCCCTAAAGCACGTCCGCTTCCAGATTTGCGACACCTGCAACACCGACACCGCCACCGTCCGCTGCTCTGCCCACAATCTCATCCTCTGCCACGCCTGCGACCTCGACGCTCACGCCCACGCCCCGGCCTCCCTCCACCACCGCCACCGCCTCCTTGGCCTCTCTGGCTGCCCCTCCCTCCACCAGATTGCCACCGCCCTTGGCCTTGATCTCCGCCTGCGCCACGCCAACTGCCGCGACGAGGTCTACCAGCAGGTCCTCGAAGTCGCGCGCACCAGGAACGAGAACGAGTTTGCGCGTTCCGAGACTGAGGAATTCAGGTTGGAGTCTGAAAATGACGTCGTCGACGAGATGTTGCTGCAGCAGACGCCGTTCACGTCCTTGCTCGGGATGCCTGATTCCCAATCTGAATTCGATGCCGCCAAAACTAACGATAACGGTTACGGAGCCCAAGTTGGAGATCTTCTCTGGAATTTTGATCCCAACTATCAGCCTCCTCAGGTGTGGGATTTTGAATTACAGAAATCAAGAGGTTGTGATGAACCAGGAGTGGTGACATTTGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTGCACAATATGAATTACTCGACCACTGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAGAAAGAAGAAAGCAACAAGAAAGCCAGAGGTGGGTTATCATCAGAGTCCAAATTGTTAGAATCAATACCGTATAGTGACACAAACAATGTGGTAGTCATGGAGCATCTTGTGGGTGGGAATGCAAATGTTAGCACCTTAAAAGCCAGGGTTAGCGTGGAAGAGTTGGCTAAGAATAGAGGTAATGCAATGTTACGCTACAAGGAAAAGAAGAAATCTCGAAGGTACGATAAACACATTCGCTATGAATCAAGAAAGGCCAGGGCTGATACCAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCAGGATGA 1119 0.5147 MLPCDYCHTKPALLFCRPDSAKLCLLCDHHVHTANALSLKHVRFQICDTCNTDTATVRCSAHNLILCHACDLDAHAHAPASLHHRHRLLGLSGCPSLHQIATALGLDLRLRHANCRDEVYQQVLEVARTRNENEFARSETEEFRLESENDVVDEMLLQQTPFTSLLGMPDSQSEFDAAKTNDNGYGAQVGDLLWNFDPNYQPPQVWDFELQKSRGCDEPGVVTFDGLEVPKSFQDVHNMNYSTTGDDILSRNNQSDQSSSSHAKKKEESNKKARGGLSSESKLLESIPYSDTNNVVVMEHLVGGNANVSTLKARVSVEELAKNRGNAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDVQAG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0577 372 MobiDBLite consensus disorder prediction 238 279 - -
Vra4g0577 372 Pfam CCT motif 324 366 IPR010402 GO:0005515
Vra4g0577 372 ProSiteProfiles Zinc finger B-box type profile. 42 91 IPR000315 GO:0008270
Vra4g0577 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 2 370 - -
Vra4g0577 372 SMART bboxneu5 1 46 IPR000315 GO:0008270
Vra4g0577 372 Coils Coil 126 146 - -
Vra4g0577 372 MobiDBLite consensus disorder prediction 238 259 - -
Vra4g0577 372 CDD Bbox1_BBX-like 3 46 - -
Vra4g0577 372 MobiDBLite consensus disorder prediction 260 275 - -
Vra4g0577 372 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 370 - -
Vra4g0577 372 ProSiteProfiles CCT domain profile. 324 366 IPR010402 GO:0005515
Vra4g0577 372 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0577 Vra-Chr4 11016323 11020078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0577 1 368 C2C2-CO-like Transcription Factor Family AT2G33500 34.709 1.25e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vra4g0577 CCT 2.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0577 - - gmx:100801439 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0577 4 11016323 11020078 Vra4g0577 4 11016323 11020078 ECH