Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0571 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCACAAAACCGAGGCCTGTGTCTTCGTGGCAGGTGTTGCTGCCGACCTTCGACTTGTCGCCGCCCCAGGAGACATCACCAACACCAACAACGTTAACACCATCACCAACACCACCACCAACGTATCTCAATCTCACGGGTCGGGTCGGATCCACGACGCCAACCACCTTGGTCTCGTCGCTGCGGTTACCAACCTTGGAACTGTTCACAGGAAGAAAAGATTGCCCAGGCAGCGAAGATCCACCATCACCACCTCCACCAACACCCCCACCTTCTTTCTCCAGAAGCACCACTCCGACAACACTCTCCCCTCTAAGCAGTACGACCCTAATTTAGCATCTTCAACTCCTTCCGCCTCCTCTCTCCAGTCCGTTAAACCCTCCACTCCTCTCCGCCTCGCCGCACGTGAAATCGATCATAGAAACTTGAAGTTCCTTTTCAAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTAAGGAGAATGGTATTGCCGAAGAAATCAGCAGAGAGTTTTCTTCCAGCCCTGGATTCAAAAGAAGGAATTATGCTCAACATGGATGACAAAGATGGTACTCATGCATGGAATTTCAAGTACAGGTTTTGGCCTAACAACAATAGTAGGATGTACGTACTTGAAAATACCGGAGATTTTGTCCGCACACATGGCCTTCGATTTGGAGATACAATTATGATTTACCAACATATTGAAAACGATAACTATGTTATTCAGGCTAGAAAAGCTTCGGAAGAAGATGAATTTGTGGAACAAAGTAGTGAGATTTTGAACGACATGTTCCCGAGTGACTTGGAGGTGAACAAACCAGGTTGTTTCAACATAAACTATCCTCCAGCGAATGATACTGGCATGTCGTTCATATACGAGACTACTCTCTCAAATGACTCCCCACTTGACTTTTTGGGAGGATCAATGACGAACTTTTCAAGGACTGGACCAGTTGAAACTTTTGGTTCTGTTGAAAATTTGTCCCTCGATGACTTCTATTAA 1041 0.4611 MMMDQRQREKLLHKTEACVFVAGVAADLRLVAAPGDITNTNNVNTITNTTTNVSQSHGSGRIHDANHLGLVAAVTNLGTVHRKKRLPRQRRSTITTSTNTPTFFLQKHHSDNTLPSKQYDPNLASSTPSASSLQSVKPSTPLRLAAREIDHRNLKFLFKKELKNSDVSSLRRMVLPKKSAESFLPALDSKEGIMLNMDDKDGTHAWNFKYRFWPNNNSRMYVLENTGDFVRTHGLRFGDTIMIYQHIENDNYVIQARKASEEDEFVEQSSEILNDMFPSDLEVNKPGCFNINYPPANDTGMSFIYETTLSNDSPLDFLGGSMTNFSRTGPVETFGSVENLSLDDFY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0571 346 MobiDBLite consensus disorder prediction 86 139 - -
Vra4g0571 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 77 346 - -
Vra4g0571 346 SUPERFAMILY DNA-binding pseudobarrel domain 156 255 IPR015300 -
Vra4g0571 346 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Vra4g0571 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 77 346 IPR044800 GO:0003700
Vra4g0571 346 Gene3D - 154 271 IPR015300 -
Vra4g0571 346 SMART B3_2 158 260 IPR003340 GO:0003677
Vra4g0571 346 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Vra4g0571 346 CDD B3_DNA 156 258 IPR003340 GO:0003677
Vra4g0571 346 MobiDBLite consensus disorder prediction 91 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0571 Vra-Chr4 10917585 10921596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0571 42 346 B3 DNA Binding Superfamily AT3G26790 45.294 1.40e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra4g0571 B3 7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0571 - - var:108328256 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0571 4 10917585 10921596 Vra4g0571 4 10917585 10921596 ECH