Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0570 ATGGCGAGTAGGTACTGGGCAGTGTCTCTTCCCGTCCACAACTCCGCATCTCAACTCTGGAACCAAATTCAAGAACGAATCTCCAAACATTCCTTCGACACTCCTCTCTACCGATTCAATATCCCTAACCTCCGCGTTGGAACCCTAGATTCTCTGCTCTCTCTCAGTGATGACCTCGCCAAGTCGAACAATTTCGTGGAAGGAGTGACGCACAAGATCAGGCGCCAGATTGAGGAGCTCCAAAGAGTTTCTGGTTTGGACAGTGGCGGCCTCACCGTTGACGGTGTCCCCGTCGATTCCTACTTGACTAGATTTGTTTGGGATGAAGCCAAGTACCCCACCATGTCGCCTTTGAAGGAGATCGTGGAAGGTATTCACAGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCTGAGTATAACAATATTCGTAGTCAGCTTAATGCTATCAACCGAAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTTAAGCCAGAGGACATTATTACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGACTGGCTTTCAAGCTACGAAACATTGACAAATTATGTGGTCCCCAGGTCTTCTAAGAAGTTGTACGAGGACAACGAATATGCTCTGTATACTGTAACACTCTTTAGTCGAGTTGCAGATAATTTTAGAACTAGTGCACGGGAAAAAGGGTTCCAAATTCGTGACTTTGAATACAGTCAAGAAACACACGAGAACCGAAAGCAAGAGTTAGATAAATTGGTACAAGATCAGGAAAGACTGAAGGCTTCTCTGTTGCAATGGTGCTTTACCAGTTATGGAGAGGTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCCGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGGCATGCGTTTTGGCTCCGTCTGTGAAATCTGAGAAGAAAGTGCGCTCTATCCTTGAAGCGTTATGTGATAGTACAAACAGTGCATACTGGAAGATTGAGGATGACGTAGGTACTGGGATGGTTGGCCTTGCAGGTGATTCCGATGCTCACCCTTATGTTTCTTTCACTATCAATCTTGCTTGA 1131 0.45 MASRYWAVSLPVHNSASQLWNQIQERISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVTHKIRRQIEELQRVSGLDSGGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVEGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSENLTTLLAIVSKYSQKDWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREKGFQIRDFEYSQETHENRKQELDKLVQDQERLKASLLQWCFTSYGEVFSSWMHFCAVRLFAESILRYGLPPSFLACVLAPSVKSEKKVRSILEALCDSTNSAYWKIEDDVGTGMVGLAGDSDAHPYVSFTINLA* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0570 376 SUPERFAMILY Vacuolar ATP synthase subunit C 2 375 IPR036132 GO:0015078|GO:0033180|GO:1902600
Vra4g0570 376 Pfam V-ATPase subunit C 5 369 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vra4g0570 376 Gene3D Vacuolar atp synthase subunit c; domain 1 8 334 - -
Vra4g0570 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vra4g0570 376 Gene3D - 41 312 - -
Vra4g0570 376 Coils Coil 254 277 - -
Vra4g0570 376 CDD V-ATPase_C 5 373 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vra4g0570 376 Gene3D - 163 251 - -
Vra4g0570 376 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0570 Vra-Chr4 10875073 10883367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0570 1 376 Primary Pumps ATPases(2) AT1G12840 82.181 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0570 K02148 - gmx:100813963 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0570 4 10875073 10883367 Vra4g0570 4 10875073 10883367 ECH