Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0561 ATGATGGAGGGCTACTCTCTTCCACCACCACCCGGTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAGGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTTCCTTTAAATCCATGCTTCAACAACAGCCTCAACAACCACAACTACAACCACAGCCACCACAACTTGACTCTTATTTCAACTTCAACATCAACTCTGCTATTCCCATTCCCTTTGTTCCTCCTATGGAATCTTTTCCCCCTCTGGACCCCTTCTCACCTTCACTTTCATCGTCTCCTTTCTTCAACAACACCAACAACACCAGCATGCCCTTTGACCCGGGCTTTGACTTGGGCCTCGACAACGGCCTTCACTCTTCATGCCCCCCTCTTTTCTCCCAGGTTCAGCCGGGCTTCGAGTTTGGAGAACTGGAAGCTCTTACTGCTGCACCTGGGCATGTGCCCTTTATGGAGGGACCCAAGGGGGAGAACCCTCTTCAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACCGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGCTGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCTGGGTTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGAGAAGTGAGAATGCTGAAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCCAAAAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATCAATGATCTCCACAACGAGCTGGAGACAACTCCAGTGGGCTCGTCGCTGCCACCTTCTACTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACTCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAATCAAGCTGCAAAGGTTGAAGTTAGAGCAAGAGAAGGGAGAGCTGTGAATATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTGTCTACCATGAAGGCTTTGGACAACCTGGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGTTACCTGAGCAAATCAAAGCAGTGCTCTTGGATTCAGCAGGGTTTCATGGTATGATGTGA 1305 0.5157 MMEGYSLPPPPGEEDAPPPSWGRPNSQEEDIAIALGAPLSFKSMLQQQPQQPQLQPQPPQLDSYFNFNINSAIPIPFVPPMESFPPLDPFSPSLSSSPFFNNTNNTSMPFDPGFDLGLDNGLHSSCPPLFSQVQPGFEFGELEALTAAPGHVPFMEGPKGENPLQRVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEAEEGSSADVDGSGLNYESDENDNGNNGLKRSENAEDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELETTPVGSSLPPSTSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRAREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0561 434 MobiDBLite consensus disorder prediction 221 247 - -
Vra4g0561 434 Pfam Helix-loop-helix DNA-binding domain 248 290 IPR011598 GO:0046983
Vra4g0561 434 MobiDBLite consensus disorder prediction 178 200 - -
Vra4g0561 434 MobiDBLite consensus disorder prediction 304 324 - -
Vra4g0561 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 241 290 IPR011598 GO:0046983
Vra4g0561 434 Gene3D - 231 304 IPR036638 GO:0046983
Vra4g0561 434 SMART finulus 247 296 IPR011598 GO:0046983
Vra4g0561 434 CDD bHLH_AtAMS_like 244 305 - -
Vra4g0561 434 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 157 434 - -
Vra4g0561 434 PANTHER BHLH TRANSCRIPTIONAL FACTOR 157 434 - -
Vra4g0561 434 CDD ACT_UUR-ACR-like 363 404 - -
Vra4g0561 434 MobiDBLite consensus disorder prediction 41 61 - -
Vra4g0561 434 MobiDBLite consensus disorder prediction 174 247 - -
Vra4g0561 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 314 IPR036638 GO:0046983
Vra4g0561 434 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0561 Vra-Chr4 10690345 10693430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0561 167 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 69.388 3.42e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra4g0561 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0561 - - gmx:100804797 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0561 4 10690345 10693430 Vra4g0561 4 10690345 10693430 ECH