Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0556 ATGTCCATCTTGCCCTCACAAACCCAAGCGTCATCTTCGTCTTCTTCATCAGCGCCGTCTCCTAACCCTAATCCCCAACATGGCATCGGAAGCCCTCTTCCTCAACAACCCTTCCCTTACCTCTCACCCCCACTCCACCACGCGCTCGGATCTCTCCAGATCTCCAGTATCGCAGGTTCTTCGACTCAAGCTACTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGATTGACGGTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGATTCACGGAGGAAGACGGGCAGGAATGGTTTCTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGGGTTCTCATGGAAGTACCCCTTTGGCAGGGAGGAAAGCTCAAACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCCCGGGGTCCCCCTCCCCCCCCTGCAGCAAGAAGGCATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGTTAGATTCGGGAAATTATTCTCCTGAGTCGATGGATCCTGATAAAATGTTGCAGTGGGAAGACATTATATGTGTGACATATTTGACCCCCTTCTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGTGATATCTGGAAAAGGTGTCCTCTGTGCTTTGTCATGACATCTGCCAAGGATTTATATACAGTTCACATCACAAATGTCAAACAGTATCAAGTAGGAGAAAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGACTCATTTACTCTGACAAGTAAAATTAAACAAGAGACAAATATCATATCATTTGGTAATGGACACTTCTGTGATCCCTTTTCAAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGGCATTCAATATCTGATCTAGATGGTTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAACTGGAACAGAGGAAGCGGCATTGGAATGAGCAAAAGTCTCATGACAGTGAAAGTTCTAAGCCCATTGATCATGCACATCAGATACAATCCATGGTCGCAAATTCTATGGATACTGATGATGAAAACTGTTCTAATGGGTCAAAAACTTCCTCTACTGATTACAGTGACCAAATTAAGGTTTCGATTCTGGAAAAGTCAACTGCTGGAGCCTGTTCTAACCAAACTTTGAATGAGGAGAAAGAATTAATAGAGCAACAAATGAATTTATGTTCTTCATATGAGGAGAAGAATAGTATTCAAAGGCCAGCAGATGATGGTGTTGTTGAAGAAATGAAGGGAAATGATTCATATAGTTTTTACCAGGCTGCTGACGGTCAGCATCTAATTCTTCATCCGATGAACATGAAGTGTTTGCTCCACCATTTTGGGAGCTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGATATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGGCTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGAAAACAACTTGCAAAAAAGGAACGGCAGGAAAAAATAAGGGCTGAAGCTACAGGTACTTATACGCTTCCCATATCATTCAGTAGTCAGCTTACATCTCATGATGATCCTCCAGCATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTTTCCTCAAGTCCTCCCGTAGCTGGGGAGAGAAAATCGTTCTCGAATGTCACGAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAATAACAATACGACAATTGATTCTTCTGCCCCAACAGGTTCGAGAAACGGGGAGACACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAATATAAGCTCGAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAAAAGCAAAATCGAGTTCTTCTATCAACAGCTGGAGGTAGACGTTATTGA 2232 0.4256 MSILPSQTQASSSSSSSAPSPNPNPQHGIGSPLPQQPFPYLSPPLHHALGSLQISSIAGSSTQATEDSGGSSEKVTELGSPSGLTVSPQQNSRTRSRIHGGRRAGMVSSHRNQQAPGSVGSHGSTPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPAARRHWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMTSAKDLYTVHITNVKQYQVGENVEFTFLTRKKDSFTLTSKIKQETNIISFGNGHFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRHWNEQKSHDSESSKPIDHAHQIQSMVANSMDTDDENCSNGSKTSSTDYSDQIKVSILEKSTAGACSNQTLNEEKELIEQQMNLCSSYEEKNSIQRPADDGVVEEMKGNDSYSFYQAADGQHLILHPMNMKCLLHHFGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALAPFMDEIKKRANQRKQLAKKERQEKIRAEATGTYTLPISFSSQLTSHDDPPAFSMDDFEALGNSTVSSSPPVAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNTTIDSSAPTGSRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKQNRVLLSTAGGRRY* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0556 743 Coils Coil 451 471 - -
Vra4g0556 743 MobiDBLite consensus disorder prediction 1 126 - -
Vra4g0556 743 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vra4g0556 743 CDD RING-HC_RNF10 220 267 - -
Vra4g0556 743 MobiDBLite consensus disorder prediction 53 95 - -
Vra4g0556 743 Pfam Zinc finger, C3HC4 type (RING finger) 220 266 IPR018957 GO:0046872
Vra4g0556 743 Coils Coil 579 603 - -
Vra4g0556 743 MobiDBLite consensus disorder prediction 1 24 - -
Vra4g0556 743 MobiDBLite consensus disorder prediction 107 126 - -
Vra4g0556 743 ProSiteProfiles Zinc finger RING-type profile. 220 266 IPR001841 -
Vra4g0556 743 MobiDBLite consensus disorder prediction 147 166 - -
Vra4g0556 743 MobiDBLite consensus disorder prediction 679 721 - -
Vra4g0556 743 PANTHER RING FINGER 10 FAMILY MEMBER 91 739 IPR039739 -
Vra4g0556 743 MobiDBLite consensus disorder prediction 679 743 - -
Vra4g0556 743 SMART ring_2 220 266 IPR001841 -
Vra4g0556 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 312 IPR013083 -
Vra4g0556 743 MobiDBLite consensus disorder prediction 25 41 - -
Vra4g0556 743 SUPERFAMILY RING/U-box 219 270 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0556 117 694 C3H Transcription Factor Family AT3G26730 53.859 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0556 - - gmx:100798764 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0556 4 10631133 10637834 Vra4g0556 4 10631133 10637834 ECH