Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0544 ATGGCCTTCTTCTGGAGCCCATGGTGGTTTATATTCCTTTTTCTTTTTTTCTCCTTTGGCTTTCTTTTTCTTTTCTTTAAATTTGTTTCTTCTTTTTCTTTCTCTTTATATAAATCCAATTCCTTTTGGGGGAATCATAAAAGACAAACAGCTCTATTTTTATGTGACCTGCACTCATTCTCTGTGCCTCTCCAATCAAACCCCACCCACCCTTTCTTCCTTGGGAAACATATCAACATGGAAAGTGATGCTGGGGAAAACTTGTTCAACACATTCTTCTCCTCCTCCACATCCATGACCATCTCCACCACCACCACCACCATCACATCATCATCATCATCATCATCATCATCTTCATCATCAGCATCATCTACCTCAAGCTCAAACTCATGCACCAAGCAGGACTCCCAAACAAGTCCTCCAGATGATTCAACAACAGCTAAGAATCAAAACACGCCAAATAAGGAATGCAAGAAAAGACAAAGAAATGGTGATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCGAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCTAGAGCACACGATGTGGCAGCTTTAGCCATAAAGGGTCACTCGGCTTACCTCAATTTCCCCAATTTAGCTCAAGATCTTCCAAGGCCCATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCGAAAGCAGCAACCACTTTCTTTGATGATGGCAAGCATTGTGAAGCAGAAAAAGATGAAAAAAACCATGCAGAACAAGCTTCATCTTCAACTCTATGCATGGAGAATATTGAGGCTGAGCAAGTTCAAGCAGAAGAAGCTTCACCTTCAACTCTATCCATGGACACTACTCAAGGGTCTTCAACTTCTCACTCTACTGCAGATGACGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTTTTACTCCTATTCTTCTTCTTGGCGTTTATGTGCTGCTGATAGTGGATTCAGGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG 1092 0.4267 MAFFWSPWWFIFLFLFFSFGFLFLFFKFVSSFSFSLYKSNSFWGNHKRQTALFLCDLHSFSVPLQSNPTHPFFLGKHINMESDAGENLFNTFFSSSTSMTISTTTTTITSSSSSSSSSSSSASSTSSSNSCTKQDSQTSPPDDSTTAKNQNTPNKECKKRQRNGDDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQDLPRPITTSPKDIQAAAAKAATTFFDDGKHCEAEKDEKNHAEQASSSTLCMENIEAEQVQAEEASPSTLSMDTTQGSSTSHSTADDDTLFDLPDLFPDGNNGLFYSYSSSWRLCAADSGFRLEEQFLWENY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0544 363 Pfam AP2 domain 170 221 IPR001471 GO:0003700|GO:0006355
Vra4g0544 363 MobiDBLite consensus disorder prediction 292 317 - -
Vra4g0544 363 PRINTS Ethylene responsive element binding protein signature 172 183 IPR001471 GO:0003700|GO:0006355
Vra4g0544 363 PRINTS Ethylene responsive element binding protein signature 194 210 IPR001471 GO:0003700|GO:0006355
Vra4g0544 363 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677
Vra4g0544 363 PANTHER ETHYLENE RESPONSE FACTOR 288 363 - -
Vra4g0544 363 PANTHER ETHYLENE RESPONSE FACTOR 95 286 - -
Vra4g0544 363 SMART rav1_2 171 234 IPR001471 GO:0003700|GO:0006355
Vra4g0544 363 MobiDBLite consensus disorder prediction 107 152 - -
Vra4g0544 363 Gene3D AP2/ERF domain 171 229 IPR036955 GO:0003700|GO:0006355
Vra4g0544 363 MobiDBLite consensus disorder prediction 153 173 - -
Vra4g0544 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 288 363 - -
Vra4g0544 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 95 286 - -
Vra4g0544 363 MobiDBLite consensus disorder prediction 107 173 - -
Vra4g0544 363 CDD AP2 170 230 IPR001471 GO:0003700|GO:0006355
Vra4g0544 363 ProSiteProfiles AP2/ERF domain profile. 171 228 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0544 Vra-Chr4 10438000 10443976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0544 158 358 AP2-EREBP Transcription Factor Family AT2G44940 55.714 1.20e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra4g0544 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0544 - - pvu:PHAVU_008G141000g 449.899